DNA methylation is an epigenetic mechanism used by higher eukaryotes and involved in e.g. gene expression, X-Chromosome inactivating, imprinting, and gene silencing of germline specific gene and repetitive elements.
Before diving into this topic, we recommend you to have a look at:
- Introduction to Galaxy Analyses
- Sequence analysis
|Lesson||Slides||Hands-on||Input dataset||Workflows||Galaxy tour|
|Introduction to DNA Methylation data analysis||slides|
|DNA Methylation data analysis||tutorial Toggle Dropdown||zenodo_link||workflow||interactive_tour|
|Hi-C analysis of Drosophila melanogaster cells using HiCExplorer||tutorial Toggle Dropdown||zenodo_link||workflow||interactive_tour|
You can use a public Galaxy instance which has been tested for the availability of the used tools. They are listed along with the tutorials above.
You can also use the following Docker image for these tutorials:
docker run -d -p 8080:80 quay.io/galaxy/epigenetics-training
It will launch a flavored Galaxy instance available on http://localhost:8080.
This material is maintained by:
For any question related to this topic and the content, you can contact them or visit our Gitter channel.
This material was contributed to by:
- Joachim Wolff
- Yvan Le Bras
- Devon Ryan
- Katarzyna Murat
- Krzysztof Poterlowicz
- Fidel Ramirez
- Vivek Bhardwaj
- Ekaterina Polkh