DNA methylation is an epigenetic mechanism used by higher eukaryotes and involved in e.g. gene expression, X-Chromosome inactivating, imprinting, and gene silencing of germline specific gene and repetitive elements.You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.
Before diving into this topic, we recommend you to have a look at:
- Introduction to Galaxy Analyses
- Quality Control: slides slides - tutorial hands-on
- Mapping: slides slides - tutorial hands-on
You can use a public Galaxy instance which has been tested for the availability of the used tools. They are listed along with the tutorials above.
You can also use the following Docker image for these tutorials:
docker run -p 8080:80 quay.io/galaxy/epigenetics-training
NOTE: Use the -d flag at the end of the command if you want to automatically download all the data-libraries into the container.
It will launch a flavored Galaxy instance available on http://localhost:8080. This instance will contain all the tools and workflows to follow the tutorials in this topic. Login as admin with password password to access everything.
Frequently Asked QuestionsCommon questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.
This material is maintained by:Lucille DelisleFlorian HeylJoachim WolffDevon Ryan
For any question related to this topic and the content, you can contact them or visit our Gitter channel.
This material was contributed to by:Katarzyna MuratDevon RyanMaria DoyleYvan Le BrasJoachim WolffLeily RabbaniLucille DelisleFidel RamirezMo HeydarianEkaterina PolkhAnika ErxlebenMallory FreebergVivek BhardwajBérénice BatutKrzysztof PoterlowiczFlorian HeylFriederike Dündar