metagenomics

Tutorials covering metagenomics

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy
Binning of metagenomic sequencing data
binning metagenomics microgalaxy
Building and Annotating Metagenome-Assembled Genomes (MAGs) from Short Metagenomics Paired Reads
assembly binning metagenomics microgalaxy
Calculating α and β diversity from microbiome taxonomic data
metagenomics diversity
Identification of the micro-organisms in a beer using Nanopore sequencing
nanopore beer citizen science metagenomics microgalaxy
Indexing and profiling microbes with MetaSBT
metagenomics diversity taxonomic profiling
QIIME 2 Moving Pictures
metagenomics taxonomic profiling diversity microgalaxy
Taxonomic Profiling and Visualization of Metagenomic Data
metagenomics taxonomic profiling microgalaxy

Contributors

This material was contributed to by:

orcid logoHelena Rasche avatar Helena RascheNuwan Goonasekera avatar Nuwan GoonasekeraNatalie Whitaker-Allen avatar Natalie Whitaker-Allenorcid logoPolina Polunina avatar Polina Poluninaorcid logoDaniel Blankenberg avatar Daniel Blankenbergorcid logoArmin Dadras avatar Armin Dadrasorcid logoFabio Cumbo avatar Fabio Cumboorcid logoTeresa Müller avatar Teresa Müllerorcid logoNikos Pechlivanis avatar Nikos PechlivanisTarnima Omara avatar Tarnima Omaraorcid logoFotis E. Psomopoulos avatar Fotis E. PsomopoulosSiyu Chen avatar Siyu Chenorcid logoPaul Zierep avatar Paul Ziereporcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoBjörn Grüning avatar Björn Grüningorcid logoVini Salazar avatar Vini Salazarorcid logoTristan Reynolds avatar Tristan ReynoldsSophia Hampe avatar Sophia Hampeorcid logoBérénice Batut avatar Bérénice Batut

Funding

These individuals or organisations provided funding support for the development of this resource

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Melbourne Bioinformatics
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IFB
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Australian BioCommons
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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ELIXIR Europe
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The University of Melbourne