metagenomics

Tutorials covering metagenomics

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy
Binning of metagenomic sequencing data
binning metagenomics microgalaxy
Building and Annotating Metagenome-Assembled Genomes (MAGs) from Short Metagenomics Paired Reads
assembly binning metagenomics microgalaxy
Calculating α and β diversity from microbiome taxonomic data
metagenomics diversity
Identification of the micro-organisms in a beer using Nanopore sequencing
nanopore beer citizen science metagenomics microgalaxy
Indexing and profiling microbes with MetaSBT
metagenomics diversity taxonomic profiling
QIIME 2 Moving Pictures
metagenomics taxonomic profiling diversity microgalaxy
Remove contamination and host reads
host-removal preprocessing metagenomics microgalaxy
Taxonomic Profiling and Visualization of Metagenomic Data
metagenomics taxonomic profiling microgalaxy

Contributors

This material was contributed to by:

orcid logoHelena Rasche avatar Helena Rascheorcid logoPolina Polunina avatar Polina Poluninaorcid logoMina Hojat Ansari avatar Mina Hojat AnsariTarnima Omara avatar Tarnima Omaraorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoBérénice Batut avatar Bérénice BatutSophia Hampe avatar Sophia Hampeorcid logoFotis E. Psomopoulos avatar Fotis E. Psomopoulosorcid logoDaniel Blankenberg avatar Daniel BlankenbergNatalie Whitaker-Allen avatar Natalie Whitaker-AllenSiyu Chen avatar Siyu ChenNuwan Goonasekera avatar Nuwan Goonasekeraorcid logoPaul Zierep avatar Paul Ziereporcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoVini Salazar avatar Vini Salazarorcid logoTeresa Müller avatar Teresa Müllerorcid logoGiuseppe Defazio avatar Giuseppe Defazioorcid logoFabio Cumbo avatar Fabio Cumboorcid logoArmin Dadras avatar Armin Dadrasorcid logoBjörn Grüning avatar Björn Grüningorcid logoNikos Pechlivanis avatar Nikos Pechlivanis

Funding

These individuals or organisations provided funding support for the development of this resource

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Australian BioCommons
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The University of Melbourne
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ELIXIR Europe
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Melbourne Bioinformatics
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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IFB