metagenomics

Tutorials covering metagenomics

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy
Binning of metagenomic sequencing data
binning metagenomics microgalaxy
Building and Annotating Metagenome-Assembled Genomes (MAGs) from Short Metagenomics Paired Reads
assembly binning metagenomics microgalaxy
Calculating α and β diversity from microbiome taxonomic data
metagenomics diversity
Detection of shared microbial strains with SameStr
metagenomics microbiome microgalaxy
Identification of the micro-organisms in a beer using Nanopore sequencing
nanopore beer citizen science metagenomics microgalaxy
Indexing and profiling microbes with MetaSBT
metagenomics diversity taxonomic profiling
QIIME 2 Moving Pictures
metagenomics taxonomic profiling diversity microgalaxy
Remove contamination and host reads
host-removal preprocessing metagenomics microgalaxy
Taxonomic Profiling and Visualization of Metagenomic Data
metagenomics taxonomic profiling microgalaxy

Contributors

This material was contributed to by:

orcid logoPaul Zierep avatar Paul Ziereporcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoHelena Rasche avatar Helena Rascheorcid logoTeresa Müller avatar Teresa MüllerNuwan Goonasekera avatar Nuwan Goonasekeraorcid logoArmin Dadras avatar Armin Dadrasorcid logoFabio Cumbo avatar Fabio Cumboorcid logoGiuseppe Defazio avatar Giuseppe Defazioorcid logoXenia Morera Martínez avatar Xenia Morera Martínezorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoNikos Pechlivanis avatar Nikos Pechlivanisorcid logoDaniel Blankenberg avatar Daniel BlankenbergNatalie Whitaker-Allen avatar Natalie Whitaker-Allenorcid logoMina Hojat Ansari avatar Mina Hojat AnsariTarnima Omara avatar Tarnima Omaraorcid logoFotis E. Psomopoulos avatar Fotis E. PsomopoulosSiyu Chen avatar Siyu ChenSophia Hampe avatar Sophia Hampeorcid logoVini Salazar avatar Vini Salazarorcid logoPolina Polunina avatar Polina Poluninaorcid logoBjörn Grüning avatar Björn Grüningorcid logoBérénice Batut avatar Bérénice Batut

Funding

These individuals or organisations provided funding support for the development of this resource

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IFB
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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Melbourne Bioinformatics
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Australian BioCommons
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The University of Melbourne
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ELIXIR Europe