metagenomics

Tutorials covering metagenomics

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy
Binning of metagenomic sequencing data
binning metagenomics microgalaxy
Building and Annotating Metagenome-Assembled Genomes (MAGs) from Short Metagenomics Paired Reads
assembly binning metagenomics microgalaxy
Calculating α and β diversity from microbiome taxonomic data
metagenomics diversity
Identification of the micro-organisms in a beer using Nanopore sequencing
nanopore beer citizen science metagenomics microgalaxy
Indexing and profiling microbes with MetaSBT
metagenomics diversity taxonomic profiling
QIIME 2 Moving Pictures
metagenomics taxonomic profiling diversity microgalaxy
Remove contamination and host reads
host-removal preprocessing metagenomics microgalaxy
Taxonomic Profiling and Visualization of Metagenomic Data
metagenomics taxonomic profiling microgalaxy

Contributors

This material was contributed to by:

Tarnima Omara avatar Tarnima Omaraorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoGiuseppe Defazio avatar Giuseppe Defazioorcid logoBérénice Batut avatar Bérénice Batutorcid logoPolina Polunina avatar Polina Poluninaorcid logoArmin Dadras avatar Armin Dadrasorcid logoSaskia Hiltemann avatar Saskia HiltemannNatalie Whitaker-Allen avatar Natalie Whitaker-Allenorcid logoTristan Reynolds avatar Tristan ReynoldsNuwan Goonasekera avatar Nuwan Goonasekeraorcid logoHelena Rasche avatar Helena RascheSiyu Chen avatar Siyu Chenorcid logoPaul Zierep avatar Paul Ziereporcid logoBjörn Grüning avatar Björn Grüningorcid logoDaniel Blankenberg avatar Daniel BlankenbergSophia Hampe avatar Sophia Hampeorcid logoFabio Cumbo avatar Fabio Cumboorcid logoVini Salazar avatar Vini Salazarorcid logoNikos Pechlivanis avatar Nikos Pechlivanisorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoFotis E. Psomopoulos avatar Fotis E. Psomopoulosorcid logoTeresa Müller avatar Teresa Müllerorcid logoMina Hojat Ansari avatar Mina Hojat Ansari

Funding

These individuals or organisations provided funding support for the development of this resource

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Melbourne Bioinformatics
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Australian BioCommons
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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ELIXIR Europe
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The University of Melbourne
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IFB