metagenomics

Tutorials covering metagenomics

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy
Binning of metagenomic sequencing data
binning metagenomics microgalaxy
Building and Annotating Metagenome-Assembled Genomes (MAGs) from Short Metagenomics Paired Reads
assembly binning metagenomics microgalaxy
Calculating α and β diversity from microbiome taxonomic data
metagenomics diversity
Identification of the micro-organisms in a beer using Nanopore sequencing
nanopore beer citizen science metagenomics microgalaxy
Indexing and profiling microbes with MetaSBT
metagenomics diversity taxonomic profiling
QIIME 2 Moving Pictures
metagenomics taxonomic profiling diversity microgalaxy
Remove contamination and host reads
host-removal preprocessing metagenomics microgalaxy
Taxonomic Profiling and Visualization of Metagenomic Data
metagenomics taxonomic profiling microgalaxy

Contributors

This material was contributed to by:

Tarnima Omara avatar Tarnima Omaraorcid logoPolina Polunina avatar Polina Poluninaorcid logoPaul Zierep avatar Paul Ziereporcid logoHelena Rasche avatar Helena Rascheorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoBjörn Grüning avatar Björn GrüningSophia Hampe avatar Sophia Hampeorcid logoDaniel Blankenberg avatar Daniel Blankenbergorcid logoFotis E. Psomopoulos avatar Fotis E. Psomopoulosorcid logoMina Hojat Ansari avatar Mina Hojat Ansariorcid logoVini Salazar avatar Vini SalazarNatalie Whitaker-Allen avatar Natalie Whitaker-Allenorcid logoNikos Pechlivanis avatar Nikos Pechlivanisorcid logoFabio Cumbo avatar Fabio Cumboorcid logoGiuseppe Defazio avatar Giuseppe DefazioSiyu Chen avatar Siyu Chenorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoBérénice Batut avatar Bérénice Batutorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoTeresa Müller avatar Teresa Müllerorcid logoArmin Dadras avatar Armin DadrasNuwan Goonasekera avatar Nuwan Goonasekera

Funding

These individuals or organisations provided funding support for the development of this resource

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Australian BioCommons
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The University of Melbourne
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ELIXIR Europe
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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IFB
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Melbourne Bioinformatics