metagenomics

Tutorials covering metagenomics

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy
Binning of metagenomic sequencing data
binning metagenomics microgalaxy
Building and Annotating Metagenome-Assembled Genomes (MAGs) from Short Metagenomics Paired Reads
assembly binning metagenomics microgalaxy
Calculating α and β diversity from microbiome taxonomic data
metagenomics diversity
Identification of the micro-organisms in a beer using Nanopore sequencing
nanopore beer citizen science metagenomics microgalaxy
Indexing and profiling microbes with MetaSBT
metagenomics diversity taxonomic profiling
QIIME 2 Moving Pictures
metagenomics taxonomic profiling diversity microgalaxy
Taxonomic Profiling and Visualization of Metagenomic Data
metagenomics taxonomic profiling microgalaxy

Contributors

This material was contributed to by:

orcid logoVini Salazar avatar Vini Salazarorcid logoBérénice Batut avatar Bérénice BatutSiyu Chen avatar Siyu ChenTarnima Omara avatar Tarnima Omaraorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoPolina Polunina avatar Polina Poluninaorcid logoDaniel Blankenberg avatar Daniel Blankenbergorcid logoHelena Rasche avatar Helena Rascheorcid logoBjörn Grüning avatar Björn Grüningorcid logoNikos Pechlivanis avatar Nikos Pechlivanisorcid logoFabio Cumbo avatar Fabio CumboNuwan Goonasekera avatar Nuwan Goonasekeraorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoPaul Zierep avatar Paul Ziereporcid logoSaskia Hiltemann avatar Saskia HiltemannNatalie Whitaker-Allen avatar Natalie Whitaker-Allenorcid logoFotis E. Psomopoulos avatar Fotis E. Psomopoulosorcid logoTeresa Müller avatar Teresa Müllerorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoArmin Dadras avatar Armin DadrasSophia Hampe avatar Sophia Hampe

Funding

These individuals or organisations provided funding support for the development of this resource

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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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The University of Melbourne
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Australian BioCommons
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ELIXIR Europe
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IFB
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Melbourne Bioinformatics