metagenomics

Tutorials covering metagenomics

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy
Binning of metagenomic sequencing data
binning metagenomics microgalaxy
Building and Annotating Metagenome-Assembled Genomes (MAGs) from Short Metagenomics Paired Reads
assembly binning metagenomics microgalaxy
Calculating α and β diversity from microbiome taxonomic data
metagenomics diversity
Detection of shared microbial strains with SameStr
metagenomics microbiome microgalaxy
Identification of the micro-organisms in a beer using Nanopore sequencing
nanopore beer citizen science metagenomics microgalaxy
Indexing and profiling microbes with MetaSBT
metagenomics diversity taxonomic profiling
QIIME 2 Moving Pictures
metagenomics taxonomic profiling diversity microgalaxy
Remove contamination and host reads
host-removal preprocessing metagenomics microgalaxy
Taxonomic Profiling and Visualization of Metagenomic Data
metagenomics taxonomic profiling microgalaxy

Contributors

This material was contributed to by:

Nuwan Goonasekera avatar Nuwan Goonasekeraorcid logoNikos Pechlivanis avatar Nikos Pechlivanisorcid logoBjörn Grüning avatar Björn Grüningorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoDaniel Blankenberg avatar Daniel Blankenbergorcid logoBérénice Batut avatar Bérénice Batutorcid logoArmin Dadras avatar Armin Dadrasorcid logoFotis E. Psomopoulos avatar Fotis E. PsomopoulosSophia Hampe avatar Sophia Hampeorcid logoPolina Polunina avatar Polina Poluninaorcid logoMina Hojat Ansari avatar Mina Hojat Ansariorcid logoFabio Cumbo avatar Fabio CumboSiyu Chen avatar Siyu Chenorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoGiuseppe Defazio avatar Giuseppe DefazioTarnima Omara avatar Tarnima Omaraorcid logoHelena Rasche avatar Helena Rascheorcid logoVini Salazar avatar Vini SalazarNatalie Whitaker-Allen avatar Natalie Whitaker-Allenorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoTeresa Müller avatar Teresa Müllerorcid logoPaul Zierep avatar Paul Ziereporcid logoXenia Morera Martínez avatar Xenia Morera Martínez

Funding

These individuals or organisations provided funding support for the development of this resource

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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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IFB
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The University of Melbourne
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Australian BioCommons
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ELIXIR Europe
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Melbourne Bioinformatics