metagenomics

Tutorials covering metagenomics

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy
Binning of metagenomic sequencing data
binning metagenomics microgalaxy
Building and Annotating Metagenome-Assembled Genomes (MAGs) from Short Metagenomics Paired Reads
assembly binning metagenomics microgalaxy
Calculating α and β diversity from microbiome taxonomic data
metagenomics diversity
Identification of the micro-organisms in a beer using Nanopore sequencing
nanopore beer citizen science metagenomics microgalaxy
Indexing and profiling microbes with MetaSBT
metagenomics diversity taxonomic profiling
QIIME 2 Moving Pictures
metagenomics taxonomic profiling diversity microgalaxy
Remove contamination and host reads
host-removal preprocessing metagenomics microgalaxy
Taxonomic Profiling and Visualization of Metagenomic Data
metagenomics taxonomic profiling microgalaxy

Contributors

This material was contributed to by:

orcid logoNikos Pechlivanis avatar Nikos PechlivanisNatalie Whitaker-Allen avatar Natalie Whitaker-AllenTarnima Omara avatar Tarnima Omaraorcid logoBérénice Batut avatar Bérénice Batutorcid logoBjörn Grüning avatar Björn Grüningorcid logoTristan Reynolds avatar Tristan ReynoldsNuwan Goonasekera avatar Nuwan Goonasekeraorcid logoFabio Cumbo avatar Fabio Cumboorcid logoFotis E. Psomopoulos avatar Fotis E. Psomopoulosorcid logoHelena Rasche avatar Helena Rascheorcid logoPaul Zierep avatar Paul Ziereporcid logoGiuseppe Defazio avatar Giuseppe DefazioSophia Hampe avatar Sophia Hampeorcid logoArmin Dadras avatar Armin Dadrasorcid logoVini Salazar avatar Vini Salazarorcid logoTeresa Müller avatar Teresa Müllerorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoDeepti Varshney avatar Deepti VarshneySiyu Chen avatar Siyu Chenorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoMina Hojat Ansari avatar Mina Hojat Ansariorcid logoDaniel Blankenberg avatar Daniel Blankenbergorcid logoPolina Polunina avatar Polina Polunina

Funding

These individuals or organisations provided funding support for the development of this resource

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ELIXIR Europe
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Melbourne Bioinformatics
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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Australian BioCommons
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IFB
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The University of Melbourne