metagenomics

Tutorials covering metagenomics

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy
Binning of metagenomic sequencing data
binning metagenomics microgalaxy
Building and Annotating Metagenome-Assembled Genomes (MAGs) from Short Metagenomics Paired Reads
assembly binning metagenomics microgalaxy
Calculating α and β diversity from microbiome taxonomic data
metagenomics diversity
Identification of the micro-organisms in a beer using Nanopore sequencing
nanopore beer citizen science metagenomics microgalaxy
Indexing and profiling microbes with MetaSBT
metagenomics diversity taxonomic profiling
QIIME 2 Moving Pictures
metagenomics taxonomic profiling diversity microgalaxy
Remove contamination and host reads
host-removal preprocessing metagenomics microgalaxy
Taxonomic Profiling and Visualization of Metagenomic Data
metagenomics taxonomic profiling microgalaxy

Contributors

This material was contributed to by:

orcid logoFabio Cumbo avatar Fabio Cumboorcid logoPaul Zierep avatar Paul Ziereporcid logoBérénice Batut avatar Bérénice Batutorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoGiuseppe Defazio avatar Giuseppe Defazioorcid logoDeepti Varshney avatar Deepti VarshneySiyu Chen avatar Siyu Chenorcid logoHelena Rasche avatar Helena Rascheorcid logoBjörn Grüning avatar Björn Grüningorcid logoPolina Polunina avatar Polina PoluninaNatalie Whitaker-Allen avatar Natalie Whitaker-AllenTarnima Omara avatar Tarnima Omaraorcid logoDaniel Blankenberg avatar Daniel Blankenbergorcid logoNikos Pechlivanis avatar Nikos Pechlivanisorcid logoMina Hojat Ansari avatar Mina Hojat Ansariorcid logoVini Salazar avatar Vini Salazarorcid logoTeresa Müller avatar Teresa Müllerorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoArmin Dadras avatar Armin DadrasNuwan Goonasekera avatar Nuwan Goonasekeraorcid logoFotis E. Psomopoulos avatar Fotis E. PsomopoulosSophia Hampe avatar Sophia Hampeorcid logoSaskia Hiltemann avatar Saskia Hiltemann

Funding

These individuals or organisations provided funding support for the development of this resource

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Melbourne Bioinformatics
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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Australian BioCommons
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IFB
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ELIXIR Europe
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The University of Melbourne