Imaging

Image analysis using Galaxy tools

Requirements

Before diving into this topic, we recommend you to have a look at:

Lesson	Slides	Hands-on	Input dataset	Workflows	Galaxy tour	Galaxy instances
Analyse HeLa fluorescence siRNA screen level level level		tutorial Toggle Dropdown FR JA ES PT AR	zenodo_link	workflow		instances UseGalaxy.eu
Introduction to image analysis using Galaxy level level level		tutorial Toggle Dropdown FR JA ES PT AR	zenodo_link	workflow		instances UseGalaxy.eu

You can use a public Galaxy instance which has been tested for the availability of the used tools. They are listed along with the tutorials above.

You can also use the following Docker image for these tutorials:

docker run -d -p 8080:80 quay.io/galaxy/imaging-training

It will launch a flavored Galaxy instance available on http://localhost:8080.

This material is maintained by:

For any question related to this topic and the content, you can contact them or visit our Gitter channel.

This material was contributed to by:

Saskia Hiltemann

Thomas Wollmann et al: Workflows for microscopy image analysis and cellular phenotyping