Imaging
Image analysis using Galaxy
Requirements
Before diving into this topic, we recommend you to have a look at:
Material
search
galaxy-cross
Lesson | Slides | Hands-on | Input dataset | Workflows | Galaxy tour | Galaxy instances |
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Analyse HeLa fluorescence siRNA screen
level level level
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tutorial Toggle Dropdown | zenodo_link | workflow | instances | ||
Introduction to image analysis using Galaxy
level level level
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tutorial Toggle Dropdown | zenodo_link | workflow | instances |
Galaxy instances
You can use a public Galaxy instance which has been tested for the availability of the used tools. They are listed along with the tutorials above.
You can also use the following Docker image for these tutorials:
docker run -d -p 8080:80 quay.io/galaxy/imaging-training
It will launch a flavored Galaxy instance available on http://localhost:8080.
Maintainers
This material is maintained by:
For any question related to this topic and the content, you can contact them or visit our Gitter channel.
Contributors
This material was contributed to by:
References
- Thomas Wollmann et al: Workflows for microscopy image analysis and cellular phenotyping