virology

Tutorials covering virology

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Sequence analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
virology

Variant Analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Avian influenza viral strain analysis from gene segment sequencing data
virology one-health
From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis
covid19 virology one-health
Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data
covid19 virology one-health
Pox virus genome analysis from tiled-amplicon sequencing data
virology one-health

Contributors

This material was contributed to by:

Verena Moosmann avatar Verena Moosmannorcid logoTeresa Müller avatar Teresa MüllerElischa Berger avatar Elischa BergerAnton Nekrutenko avatar Anton Nekrutenkoorcid logoBérénice Batut avatar Bérénice Batutorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoBjörn Grüning avatar Björn Grüningorcid logoDave Clements avatar Dave Clementsorcid logoHelena Rasche avatar Helena Rascheorcid logoTomas Klingström avatar Tomas Klingströmorcid logoDaniel Blankenberg avatar Daniel BlankenbergMélanie Petera avatar Mélanie Peteraorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoMarius van den Beek avatar Marius van den Beekorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoBeatriz Serrano-Solano avatar Beatriz Serrano-SolanoJasper Ouwerkerk avatar Jasper Ouwerkerk

Funding

These individuals or organisations provided funding support for the development of this resource

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DEFEND
DEFEND is Addressing the dual emerging threats of African Swine Fever and Lumpy Skin Disease in Europe. This work has received funding from the DEFEND project (www.defend2020.eu) with funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No 773701.
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BeYond-COVID
BY-COVID is an EC funded project that tackles the data challenges that can hinder effective pandemic response. This project has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement № 101046203 (BY-COVID)
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ELIXIR-CONVERGE
ELIXIR CONVERGE is connecting and align ELIXIR Nodes to deliver sustainable FAIR life-science data management services. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement № 871075