amr

Tutorials covering amr

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
nanopore assembly amr microgalaxy

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Identification of AMR genes in an assembled bacterial genome
gmod illumina amr one-health jbrowse1 microgalaxy

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
Antibiotic resistance detection
nanopore plasmids assembly amr microgalaxy

Contributors

This material was contributed to by:

orcid logoBjörn Grüning avatar Björn GrüningMatúš Kalaš avatar Matúš KalašWillem de Koning avatar Willem de Koningorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoMiaomiao Zhou avatar Miaomiao Zhouorcid logoHelena Rasche avatar Helena RascheBazante Sanders avatar Bazante Sandersorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoBérénice Batut avatar Bérénice Batutorcid logoAnthony Bretaudeau avatar Anthony Bretaudeau

Funding

These individuals or organisations provided funding support for the development of this resource

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ABRomics
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The University of Melbourne
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Australian BioCommons
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Avans
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Melbourne Bioinformatics
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ELIXIR Europe