amr

Tutorials covering amr

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
nanopore assembly amr microgalaxy

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Identification of AMR genes in an assembled bacterial genome
gmod illumina amr one-health jbrowse1 microgalaxy

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
Antibiotic resistance detection
nanopore plasmids assembly amr microgalaxy

Contributors

This material was contributed to by:

orcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoSaskia Hiltemann avatar Saskia HiltemannBazante Sanders avatar Bazante Sandersorcid logoBjörn Grüning avatar Björn Grüningorcid logoBérénice Batut avatar Bérénice Batutorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoMiaomiao Zhou avatar Miaomiao Zhouorcid logoDeepti Varshney avatar Deepti VarshneyMatúš Kalaš avatar Matúš Kalašorcid logoHelena Rasche avatar Helena Rascheorcid logoAnthony Bretaudeau avatar Anthony BretaudeauWillem de Koning avatar Willem de Koning

Funding

These individuals or organisations provided funding support for the development of this resource

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ABRomics
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Avans
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Melbourne Bioinformatics
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ELIXIR Europe
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Australian BioCommons
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The University of Melbourne