Jennifer Hillman-Jackson
Contributions
The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.
Editorial Roles
This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.
Tutorials
- Variant Analysis / Microbial Variant Calling 🧐
- Introduction to Galaxy Analyses / Galaxy Basics for everyone 🧐
Slides
FAQs
- How do I create an account on a public Galaxy instance?
- How can I reduce quota usage while still retaining prior work (data, tools, methods)?
- How to update account preferences?
- Extended Help for Differential Expression Analysis Tools
- Reporting usage problems, security issues, and bugs
- Incomplete Dataset Download
- How to find and correct tool errors related to Metadata?
- Finding BAM dataset identifiers
- Directly obtaining UCSC sourced *genome* identifiers
- Mismatched Chromosome identifiers and how to avoid them
- How to set Data Privacy Features?
- Downloading datasets
- Downloading datasets using command line
- Finding Datasets
- How to hide datasets?
- Different dataset icons and their usage
- Understanding job statuses
- Moving datasets between Galaxy servers
- Datasets not downloading at all
- Purging datasets
- Quotas for datasets and histories
- Working with deleted datasets
- Working with very large fasta datasets
- Working with very large fastq datasets
- Working with GFF GFT GTF2 GFF3 reference annotation
- Using compressed fastq data as tool inputs
- Best practices for loading fastq data into Galaxy
- How do `fastq.gz` datasets relate to the `.fastqsanger` datatype metadata assignment?
- How to format fastq data for tools that require .fastqsanger format?
- Identifying and formatting Tabular Datasets
- Understanding Datatypes
- How can I upload data using EBI-SRA?
- Data retrieval with “NCBI SRA Tools” (fastq-dump)
- NCBI SRA sourced fastq data
- Ways to use Galaxy
- How can I load data?
- Downloading histories
- Find all Histories and purge (aka permanently delete)
- Finding Histories
- Finding and working with "Histories shared with me"
- Transfer entire histories from one Galaxy server to another
- Unsharing unwanted histories
- How to use Custom Reference Genomes?
- Sorting Reference Genome
- Troubleshooting Custom Genome fasta
- Where is the tool help?
- Sorting Tools
- Tool doesn't recognize input datasets
- Understanding 'canceled by admin' or cluster failure error messages
- Understanding 'exceeds memory allocation' error messages
- Understanding input error messages
- Understanding ValueError error messages
- Understanding walltime error messages
- Does your account usage quota seem incorrect?
- Forgot Password
- Changing acount email or password
GitHub Activity
github Issues Reported
26 Merged Pull Requests
See all of the github Pull Requests and github Commits by Jennifer Hillman-Jackson.
-
Update example history share link slug
broken linkgalaxy-interface -
Reorder parameters to match tool form
introduction
-
Correct typo
data-science
-
Update for newer Data menu histories_transfer_entire_histories_from_o…
faqs
-
Update analysis_differential_expression_help.md new link type and minor reorg
faqs
Reviewed 21 PRs
We love our community reviewing each other's work!
-
Update for newer Data menu histories_transfer_entire_histories_from_o…
faqs
-
Update analysis_differential_expression_help.md new link type and minor reorg
faqs
-
Update reference_genomes_custom_genomes.md
template-and-toolsfaqs
-
Update reference_genomes_custom_genomes.md
faqs
-
Update analysis_differential_expression_help.md
faqs
News
Next GTN CoFest May 20, 2021
External Links
Favourite Topics
Favourite Formats