Anne Fouilloux
Contributions
The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.
Editorial Roles
This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.
- Topic: Climate
Tutorials
- Sequence analysis / Quality Control 🧐
- Transcriptomics / RNA Seq Counts to Viz in R 🧐
- Using Galaxy and Managing your Data / JupyterLab in Galaxy ✍️ 🧐
- Introduction to Galaxy Analyses / How to reproduce published Galaxy analyses ✍️
- Introduction to Galaxy Analyses / Galaxy Basics for everyone ✍️ 🧐
- Imaging / Nucleoli segmentation and feature extraction using CellProfiler 🧐
- Imaging / Voronoi segmentation ✍️
- Ecology / Visualize EBV cube data with Panoply netCDF viewer ✍️
- Ecology / Metabarcoding/eDNA through Obitools 🧐
- Climate / Functionally Assembled Terrestrial Ecosystem Simulator (FATES) with Galaxy Climate JupyterLab ✍️ 🧐
- Climate / Pangeo ecosystem 101 for everyone - Introduction to Xarray Galaxy Tools ✍️ 🧐
- Climate / Collaboration with JupyterGIS ✍️ 🧐
- Climate / Pangeo Notebook in Galaxy - Introduction to Xarray ✍️ 🧐
- Climate / Functionally Assembled Terrestrial Ecosystem Simulator (FATES) ✍️ 🧐
- Climate / Getting your hands-on climate data ✍️ 🧐
- Climate / Visualize Climate data with Panoply netCDF viewer ✍️ 🧐
- Galaxy Server administration / Use Apptainer containers for running Galaxy jobs 🧐
- Galaxy Server administration / Galaxy Monitoring with gxadmin 🧐
Slides
- Assembly / De Bruijn Graph Assembly 🧐
- Introduction to Galaxy Analyses / Introduction to Galaxy ✍️ 🧐
-
Imaging
/
Nucleoli Segmentation
&
Feature Extraction
using CellProfiler 🧐 - Climate / Pangeo ecosystem 101 for everyone ✍️ 🧐
- Climate / Introduction to climate data ✍️ 🧐
- Climate / The Pangeo ecosystem ✍️ 🧐
- Climate / Functionally Assembled Terrestrial Ecosystem Simulator (FATES) ✍️ 🧐
FAQs
- Results may vary
- Detecting the datatype (file format)
- Find all Histories and purge (aka permanently delete)
- Launch JupyterLab
- Opening the workflow editor
Video Recordings
- Climate / Functionally Assembled Terrestrial Ecosystem Simulator (FATES) 💬
- Foundations of Data Science / R basics in Galaxy 💬
- Using Galaxy and Managing your Data / Using dataset collections 💬
- Introduction to Galaxy Analyses / Galaxy Basics for everyone 🗣
- Climate / Pangeo ecosystem 101 for everyone - Introduction to Xarray Galaxy Tools 💬 🗣
- Climate / Collaboration with JupyterGIS 💬 🗣
- Climate / Pangeo Notebook in Galaxy - Introduction to Xarray 💬 🗣
- Climate / Functionally Assembled Terrestrial Ecosystem Simulator (FATES) 🗣
Events
GitHub Activity
github Issues Reported
21 Merged Pull Requests
See all of the github Pull Requests and github Commits by Anne Fouilloux.
-
Voronoi Segmentation for different scientific disciplines (bioimaging & Earth Observation)
imaging -
add subtopics for climate
climate -
fix Getting your hands on climate
climate -
address formatting issues with jupytergis: fix #5929
climate -
fix missing dataset FAQs
Reviewed 41 PRs
We love our community reviewing each other's work!
-
Added note regarding the timeseries plot
climate -
[Google Form] New Recording Submission! - Collaboration with JupyterGIS - annefou
climateGTA -
Event page gta added Climat track
template-and-tools -
JupyterGIS collaborative features tutorial
template-and-toolsclimate -
Tutorial added to ecology folder: "Visualization of Climate Data using NetCDF Xarray Map Plotting"
External Links
Favourite Topics
Favourite Formats