Anne Fouilloux

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Editorial Roles

This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.

• Climate

Tutorials

• Sequence analysis / Quality Control 🧐
• Using Galaxy and Managing your Data / JupyterLab in Galaxy ✍️ 🧐
• Ecology / Visualize EBV cube data with Panoply netCDF viewer ✍️
• Ecology / Metabarcoding/eDNA through Obitools 🧐
• Galaxy Server administration / Galaxy Monitoring with gxadmin 🧐
• Galaxy Server administration / Use Apptainer containers for running Galaxy jobs 🧐
• Climate / Functionally Assembled Terrestrial Ecosystem Simulator (FATES) with Galaxy Climate JupyterLab ✍️ 🧐
• Climate / Pangeo Notebook in Galaxy - Introduction to Xarray ✍️ 🧐
• Climate / Visualize Climate data with Panoply netCDF viewer ✍️ 🧐
• Climate / Functionally Assembled Terrestrial Ecosystem Simulator (FATES) ✍️ 🧐
• Climate / Pangeo ecosystem 101 for everyone - Introduction to Xarray Galaxy Tools ✍️ 🧐
• Climate / Getting your hands-on climate data ✍️ 🧐
• Introduction to Galaxy Analyses / How to reproduce published Galaxy analyses ✍️
• Introduction to Galaxy Analyses / Galaxy Basics for everyone ✍️ 🧐
• Transcriptomics / RNA Seq Counts to Viz in R 🧐
• Imaging / Nucleoli segmentation and feature extraction using CellProfiler 🧐

Slides

• Assembly / De Bruijn Graph Assembly 🧐
• Climate / The Pangeo ecosystem ✍️ 🧐
• Climate / Functionally Assembled Terrestrial Ecosystem Simulator (FATES) ✍️ 🧐
• Climate / Introduction to climate data ✍️ 🧐
• Climate / Pangeo ecosystem 101 for everyone ✍️ 🧐
• Introduction to Galaxy Analyses / Introduction to Galaxy ✍️ 🧐
• Imaging / Nucleoli Segmentation
  &
  Feature Extraction
  using CellProfiler 🧐

FAQs

• Results may vary
• Detecting the datatype (file format)
• Find all Histories and purge (aka permanently delete)
• Launch JupyterLab
• Opening the workflow editor

Video Recordings

• Climate / Functionally Assembled Terrestrial Ecosystem Simulator (FATES) 💬
• Using Galaxy and Managing your Data / Using dataset collections 💬
• Foundations of Data Science / R basics in Galaxy 💬
• Climate / Pangeo Notebook in Galaxy - Introduction to Xarray 💬 🗣
• Climate / Functionally Assembled Terrestrial Ecosystem Simulator (FATES) 🗣
• Climate / Pangeo ecosystem 101 for everyone - Introduction to Xarray Galaxy Tools 💬 🗣
• Introduction to Galaxy Analyses / Galaxy Basics for everyone 🗣

GitHub Activity

github Issues Reported

17 Merged Pull Requests

See all of the github Pull Requests and github Commits by Anne Fouilloux.

• fix missing dataset FAQs
• Try to fix issues with Pangeo videos
• Pangeo training material for Big data geosciences
• spaces missing in the sentence
  paper-cut
• fix a few errors in speaker notes

Reviewed 37 PRs

We love our community reviewing each other's work!

• Tutorial added to ecology folder: "Visualization of Climate Data using NetCDF Xarray Map Plotting"
• Fix typo in FAQ area
• Create Datasets_ Data_Privacy_Features.md
  template-and-tools
  faq
  faqs
• [FAQ] Added FAQ regarding input problems faced in job failures
• FAQ custom genomes

External Links

Favourite Topics

Favourite Formats