Marisa Loach

Affiliations

Former Affiliations

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Editorial Roles

This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.

• Single Cell

Tutorials

• Contributing to the Galaxy Training Material / Creating content in Markdown 🧐
• Single Cell / Generating a single cell matrix using Alevin 🧐
• Single Cell / Combining single cell datasets after pre-processing 🧐
• Single Cell / Filter, plot and explore single-cell RNA-seq data with Scanpy 🧐
• Single Cell / Removing the effects of the cell cycle ✍️ 🧐
• Single Cell / Clustering 3K PBMCs with Seurat ✍️
• Single Cell / Matrix Exchange Format to ESet | Creating a single-cell RNA-seq reference dataset for deconvolution ⚙️
• Single Cell / Bulk matrix to ESet | Creating the bulk RNA-seq dataset for deconvolution ⚙️
• Single Cell / Inferring single cell trajectories with Scanpy ✍️ 🧐
• Single Cell / Comparing inferred cell compositions using MuSiC deconvolution ⚙️

Slides

• Single Cell / Automated Cell Annotation 🧐
• Single Cell / Single-cell Formats and Resources 🧐

Video Recordings

• Single Cell / Generating a single cell matrix using Alevin 💬 🗣

Events

• 2024 Bioinformatics Bootcamp - The Open University 🧑‍🏫

GitHub Activity

github Issues Reported

18 Merged Pull Requests

See all of the github Pull Requests and github Commits by Marisa Loach.

• Adding Seurat version of the PBMC clustering tutorial
  single-cell
• Updating input history link in text
  single-cell
• Updating case study tutorials
  single-cell
• Adding tutorial on trajectory analysis
  single-cell
• Adding link to cell cycle tutorial
  single-cell

Reviewed 9 PRs

We love our community reviewing each other's work!

• Add MD-Chem as contributor
  template-and-tools
  spoc-cofest
• Edited training material "Automated Cell Annotation" upto slide 10
  single-cell
  spoc-cofest
• update learning pathways for seurat and scanpy
  template-and-tools
• Updating case study tutorials
  single-cell
• New single-cell formats and sources slide deck
  single-cell

News

External Links

Favourite Topics

Favourite Formats