Ecology

Learn all about Biodiversity data treatment on Galaxy. Start with the tutorial at your own pace. If you need support contact us via the Slack Channel gta_ecology.

Organiser(s) orcid logoYvan Le Bras avatar Yvan Le Bras
Instructor(s) orcid logoPauline Seguineau avatar Pauline SeguineauMarie Josse avatar Marie Josseorcid logoYvan Le Bras avatar Yvan Le Bras

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Ecology / Biodiversity data treatment

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Lesson Slides Hands-on Recordings
Biodiversity data exploration
taxonomic data data quality biodiversity
Cleaning GBIF data for the use in Ecology
gbif data management data cleaning biodiversity
SAM3 – AI-based Semantic Segmentation of marine biodiversity Images and Videos
Marine ecosystems Biodiversity AI segmentation
Object detection with YOLO
object-detection deep-learning ecology biodiversity marine
Compute and analyze biodiversity metrics with PAMPA toolsuite
species population EBV class community composition EBV class EBV dataset EBV workflow modeling biodiversity
Obis marine indicators
earth-system ocean marine omics biodiversity
Visualize EBV cube data with Panoply netCDF viewer
interactive tools EBV cube data visualization

In collaboration with

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DATA TERRA
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PNDB
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Gaia Data
This work was supported by the Agence Nationale de la Recherche as part of the “Investissements d’Avenir” Equipex+ Gaia Data program n°ANR-21ESRE-0010.