Transcriptomics

Welcome to the transcriptomics track. Here you can learn how to map the raw RNA-seq sequencing data to a reference, preform an differential expression analysis, GO analysis. Further you can learn how to plot your processed data. Additionally you can also learn how to perform a differential Isofrom expression analysis, as well as how to annotate lncRNAs. If you want to learn more in the field of transciptomics please also have a look at the single cell track. Start with the tutorial at your own pace. If you need support contact us via the Slack Channel gta_transcriptomics.

Organisers(s) Teresa Müller avatar Teresa Müller
Instructor(s) orcid logoAnika Erxleben avatar Anika Erxleben orcid logoAnna Syme avatar Anna Syme orcid logoAnthony Bretaudeau avatar Anthony Bretaudeau orcid logoAmirhossein Naghsh Nilchi avatar Amirhossein Naghsh Nilchi orcid logoDiana Chiang Jurado avatar Diana Chiang Jurado Deepti Varshney avatar Deepti Varshney Gareth Price avatar Gareth Price Igor Makunin avatar Igor Makunin orcid logoLucille Delisle avatar Lucille Delisle orcid logoMarisa Loach avatar Marisa Loach Meltem Kutnu avatar Meltem Kutnu orcid logoPavankumar Videm avatar Pavankumar Videm orcid logoRomane LIBOUBAN avatar Romane LIBOUBAN orcid logoSaim Momin avatar Saim Momin orcid logoStéphanie Robin avatar Stéphanie Robin Teresa Müller avatar Teresa Müller Tyler Collins avatar Tyler Collins

Need help with these tutorials?

Open Slack support channel for this track:   #gta_transcriptomics

Transcriptomics introduction

If you are new to transcriptomics please start with the following tutorials. If you encounter any issue please ask us on Slack.

Lesson Slides Hands-on Recordings
Introduction to Transcriptomics
Reference-based RNA-Seq data analysis
bulk rna-seq collections drosophila QC cyoa
Visualization of RNA-Seq results with Volcano Plot

Advanced analysis

Here are some more advanced tutorials you can follow if you like. If you encounter any issue please ask us on Slack.

Lesson Slides Hands-on Recordings
Genome-wide alternative splicing analysis
alternative splicing isoform switching
Long non-coding RNAs (lncRNAs) annotation with FEELnc
eukaryote