Add genome and annotations to IGV from Galaxy
Authors: 
 Delphine Lariviere
    Delphine Lariviere
 Bérénice Batut
    Bérénice Batut
 Helena Rasche
    Helena Rasche
 Saskia Hiltemannhall-of-fameAdd Contributions!
    Saskia Hiltemannhall-of-fameAdd Contributions!
    



- Upload a FASTA file with the reference genome and a GFF3 file with its annotation in the history (if not already there)
- Install IGV (if not already installed)
- Launch IGV on your computer
- Expand the FASTA dataset with the genome in the history
- Click on the localindisplay with IGVto load the genome into the IGV browser
- Wait until all Dataset status are ok
- 
    Close the window An alert ERROR Parameter "file" is requiredmay appear. Ignore it.
- Expand the GFF3 dataset with the annotations of the genome in the history
- Click on the localindisplay with IGVto load the annotation into the IGV browser
- 
    Switch to the IGV instance The annotation track should appear. Be careful that all files have the same genome ID