Object feature extraction

Tutorials covering Object feature extraction

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Imaging

Lesson Slides Hands-on Recordings Input dataset Workflows
Analyse HeLa fluorescence siRNA screen
Image segmentation Object feature extraction Image thresholding High-throughput screening Overlay Fluorescence microscopy
Nucleoli segmentation and feature extraction using CellProfiler
Image segmentation Object feature extraction Multi-channel image
Quantification of electrophoresis gel bands using QuPath and Galaxy imaging tools
ROI selection Conversion Object feature extraction Multi-channel image
Segmentation of Anatomical Structures in Medical 3-D Images
Image segmentation Conversion Overlay Object feature extraction Medical imaging Computed tomography 3D image Volume rendering
Use Pycytominer in Galaxy for processing high dimensional image-based readouts
Object feature extraction high-throughput data cleaning cellprofiler deepprofiler

Contributors

This material was contributed to by:

orcid logoBjörn Grüning avatar Björn GrüningErik Serrano avatar Erik Serranoorcid logoBeatriz Serrano-Solano avatar Beatriz Serrano-Solanoorcid logoHelena Rasche avatar Helena Rascheorcid logoDiana Chiang Jurado avatar Diana Chiang Juradoorcid logoReyhaneh Tavakoli-Koopaei avatar Reyhaneh Tavakoli-Koopaeiorcid logoThomas Wollmann avatar Thomas Wollmannorcid logoRiccardo Massei avatar Riccardo MasseiDave Bunten avatar Dave Buntenorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoLeonid Kostrykin avatar Leonid KostrykinJean-Karim Hériché avatar Jean-Karim Hérichéorcid logoSaskia Hiltemann avatar Saskia Hiltemann

Funding

These individuals or organisations provided funding support for the development of this resource

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de.NBI
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