Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
illumina assembly microgalaxy
Hybrid genome assembly - Nanopore and Illumina
assembly nanopore illumina denovo genomics

Ecology

Lesson Slides Hands-on Recordings Input dataset Workflows
Checking expected species and contamination in bacterial isolate
illumina bacteria microgalaxy

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Bacterial Genome Annotation
gmod illumina bacteria microgalaxy jbrowse1
Identification of AMR genes in an assembled bacterial genome
gmod illumina amr one-health jbrowse1 microgalaxy

Sequence analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
illumina bacteria microgalaxy