data cleaning

Tutorials covering data cleaning

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Ecology

Lesson Slides Hands-on Recordings Input dataset Workflows
Cleaning GBIF data for the use in Ecology
gbif data management data cleaning biodiversity
Cleaning GBIF data using OpenRefine
biodiversity data cleaning

Imaging

Lesson Slides Hands-on Recordings Input dataset Workflows
Use Pycytominer in Galaxy for processing high dimensional image-based readouts
Object feature extraction high-throughput data cleaning cellprofiler deepprofiler

Contributors

This material was contributed to by:

Erik Serrano avatar Erik Serranoorcid logoLeonid Kostrykin avatar Leonid KostrykinSimon Benateau avatar Simon Benateauorcid logoRiccardo Massei avatar Riccardo Masseiorcid logoBjörn Grüning avatar Björn GrüningSophie Pamerlon avatar Sophie Pamerlonorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoHelena Rasche avatar Helena Rascheorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoDaniela Schneider avatar Daniela Schneiderorcid logoDiana Chiang Jurado avatar Diana Chiang Juradoorcid logoBeatriz Serrano-Solano avatar Beatriz Serrano-Solanoorcid logoMarie Josse avatar Marie JosseDave Bunten avatar Dave BuntenLaura Russell avatar Laura Russell

Funding

These individuals or organisations provided funding support for the development of this resource

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PNDB
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GBIF
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NFDI4Bioimage
NFDI4BIOIMAGE is a nationwide community of researchers, imaging specialists and data experts who work with biological image data. We support anyone who generates, analyses or manages microscopy and bioimaging data. Our aim is to make imaging data easier to find, access, reuse and share by providing practical tools, clear guidance and hands on training. We collaborate closely with laboratories and research communities across Germany to understand their needs and develop solutions that help with real everyday challenges. Whether you are building new workflows, exploring advanced analysis methods or improving your data management, NFDI4BIOIMAGE offers support, expertise and a welcoming network.