Single Cell

Lesson Slides Hands-on Recordings Input dataset Workflows
Generating a single cell matrix using Alevin
Generating a single cell matrix using Alevin and combining datasets (bash + R)
Pre-processing of 10X Single-Cell ATAC-seq Datasets
Pre-processing of 10X Single-Cell RNA Datasets
10x
Clustering 3K PBMCs with Scanpy
10x
Combining single cell datasets after pre-processing
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
Removing the effects of the cell cycle
10x
Filter, plot and explore single-cell RNA-seq data with Scanpy
Filter, plot, and explore single cell RNA-seq data with Seurat
Inferring single cell trajectories with Scanpy (Python)
Inferring single cell trajectories with Monocle3 (R)
Inferring single cell trajectories with Scanpy
Inferring single cell trajectories with Monocle3