Paul Zierep

Affiliations

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Editorial Roles

This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.

• Microbiome

Tutorials

• Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data ✍️
• Microbiome / Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition ✍️ 🧐
• Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data (short) ✍️
• Microbiome / Identifying Mycorrhizal Fungi from ITS2 sequencing using LotuS2 🧐
• Microbiome / Taxonomic Profiling and Visualization of Metagenomic Data ✍️ 🧐
• Microbiome / Calculating α and β diversity from microbiome taxonomic data ✍️ 🧐
• Genome Annotation / Secondary metabolite discovery ✍️ 🧐
• Genome Annotation / Bacterial Genome Annotation 🧐
• Development in Galaxy / Adding and updating best practice metadata for Galaxy tools using the bio.tools registry ✍️ 🧐
• Galaxy Community Building / Creation of an interactive Galaxy tools table for your community ✍️ 🧐

Slides

• Microbiome / Introduction to Microbiome Analysis ✍️

Video Recordings

• Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data 💬 🗣
• Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data (short) 💬 🗣
• Microbiome / Calculating α and β diversity from microbiome taxonomic data 💬 🗣

Events

• Workshop on high-throughput sequencing data analysis with Galaxy 🧑‍🏫
• Workshop on high-throughput sequencing data analysis with Galaxy 🧑‍🏫
• Galaxy Training Academy 2024 🧑‍🏫

GitHub Activity

github Issues Reported

18 Merged Pull Requests

See all of the github Pull Requests and github Commits by Paul Zierep.

• Fix the hands on in Creation of an interactive Galaxy tools table for your community
  dev
• Update microbiome track
  template-and-tools
• Major update of the introduction to microbiome analysis
  microbiome
• Add subtopic for diversity toturial
  microbiome
• Update diversity toturial
  microbiome

Reviewed 11 PRs

We love our community reviewing each other's work!

• tiny edits to LOTUS2
  microbiome
• Add new ecology tutorial on identifying mycorrhizal fungi using lotus2 tool
  template-and-tools
  microbiome
• Update diversity toturial
  microbiome
• [Bacterial Genome Annotation] Update tool versions
  genome-annotation
• Creation of Diversity tutorial
  metagenomics
  microbiome

News

External Links

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