Single Cell

Learn all about Single Cell on Galaxy. Start with the tutorial at your own pace. If you need support contact us during the event via the gta_single-cell Slack Channel.

Organiser(s) orcid logoPavankumar Videm avatar Pavankumar Videmorcid logoWendi Bacon avatar Wendi Bacon
Instructor(s) orcid logoAnna Syme avatar Anna Symeorcid logoAmirhossein Naghsh Nilchi avatar Amirhossein Naghsh Nilchiorcid logoDiana Chiang Jurado avatar Diana Chiang Juradoorcid logoMarisa Loach avatar Marisa Loachorcid logoPavankumar Videm avatar Pavankumar Videmorcid logoWendi Bacon avatar Wendi Bacon

Single Cell

If you encounter any issue please ask us in this Slack channel.

Lesson Slides Hands-on Recordings
An introduction to scRNA-seq data analysis
Single-cell Formats and Resources
Pre-processing of 10X Single-Cell RNA Datasets
10x
Clustering 3K PBMCs with Scanpy
10x
Generating a single cell matrix using Alevin
paper-replication MIGHTS