Synthetic Biology

Synthetic Biology is the engineering of biology : the deliberate (re)design and construction of novel biological and biologically based parts, devices and systems to perform new functions for useful purposes, that draws on principles elucidated from biology and engineering. By applying these principles to living systems, Synthetic Biology overcomes mimicry and optimisation-led research and introduces a rationale and systematic approach to the construction and (re)design. Synthetic Biology is at the intersection of engineering, bioscience, chemistry, and information technology. The goal of synthetic biology is to extend or modify the behavior of organisms and engineer them to perform new tasks. In this section, the tutorials shows how to design metabolic pathways for producing the desired chemical targets.

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

Lesson Slides Hands-on Recordings Input dataset Workflows
Designing plasmids encoding predicted pathways by using the BASIC assembly method
Evaluating and ranking a set of pathways based on multiple metrics
Generating theoretical possible pathways for the production of Lycopene in E.Coli using Retrosynthesis tools

Galaxy instances

You can use a public Galaxy instance which has been tested for the availability of the used tools. They are listed along with the tutorials above.

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoKenza Bazi-Kabbaj avatar Kenza Bazi-Kabbajorcid logoThomas Duigou avatar Thomas Duigouorcid logoJoan Hérisson avatar Joan Hérissonorcid logoGuillaume Gricourt avatar Guillaume Gricourt

For any question related to this topic and the content, you can contact them or visit our Gitter channel.

Contributors

This material was contributed to by:

orcid logoIoana Popescu avatar Ioana Popescuorcid logoThomas Duigou avatar Thomas Duigouorcid logoGuillaume Gricourt avatar Guillaume Gricourtorcid logoKenza Bazi-Kabbaj avatar Kenza Bazi-Kabbajorcid logoJean-Loup Faulon avatar Jean-Loup Faulonorcid logoJoan Hérisson avatar Joan Hérisson

Funders

This material was funded by: