Jekyll 2022-09-26T09:29:24+00:00 https://training.galaxyproject.org/training-material/topics/synthetic-biology/feed.xml Recently added tutorials, slides, FAQs, and events in the synthetic-biology topic https://training.galaxyproject.org/training-material/assets/images/GTN-60px.png https://training.galaxyproject.org/training-material/topics/synthetic-biology/tutorials/pathway_analysis/workflows/main_workflow.html 2022-09-26T09:29:24+00:00

Evaluating and ranking a set of pathways based on multiple metrics

https://training.galaxyproject.org/training-material/topics/synthetic-biology/tutorials/pathway_analysis/tutorial.html 2022-09-26T09:29:24+00:00

Progress in synthetic biology is enabled by powerful bioinformatics tools such as those aimed to design metabolic pathways for the production of chemicals. These tools are available in SynBioCAD portal which is the first Galaxy set of tools for synthetic biology and metabolic engineering (Hérisson et al. 2022).

Kenza Bazi-Kabbaj https://training.galaxyproject.org/training-material/hall-of-fame/kenza12/ Thomas Duigou https://training.galaxyproject.org/training-material/hall-of-fame/tduigou/ Joan Hérisson https://training.galaxyproject.org/training-material/hall-of-fame/breakthewall/ Guillaume Gricourt https://training.galaxyproject.org/training-material/hall-of-fame/guillaume-gricourt/ Ioana Popescu https://training.galaxyproject.org/training-material/hall-of-fame/ioanagry/ Jean-Loup Faulon https://training.galaxyproject.org/training-material/hall-of-fame/jfaulon/ Helena Rasche https://training.galaxyproject.org/training-material/hall-of-fame/hexylena/ Kenza Bazi-Kabbaj https://training.galaxyproject.org/training-material/hall-of-fame/kenza12/ Saskia Hiltemann https://training.galaxyproject.org/training-material/hall-of-fame/shiltemann/ https://training.galaxyproject.org/training-material/topics/synthetic-biology/tutorials/pathway_analysis/recordings/#tutorial-recording-26-september-2022 2022-09-26T00:00:00+00:00

A 5M long recording is now available.

Joan Hérisson https://training.galaxyproject.org/training-material/hall-of-fame/breakthewall/ https://training.galaxyproject.org/training-material/topics/synthetic-biology/tutorials/retrosynthesis_analysis/workflows/RetroSynthesis.html 2022-06-23T14:06:47+00:00

Generating theoretical possible pathways for the production of Lycopene in E.Coli using Retrosynthesis tools

https://training.galaxyproject.org/training-material/topics/synthetic-biology/tutorials/retrosynthesis_analysis/tutorial.html 2022-06-23T14:06:47+00:00

Galaxy-SynBioCAD portal is the first toolshed for synthetic biology, metabolic engineering, and industrial biotechnology (Hérisson et al. 2022). It provides a set of Retrosynthesis tools aimed at finding pathways to synthesize heterologous compounds in chassis organisms (RetroRules (Duigou et al. 2018), RetroPath2.0 (Delépine et al. 2018), RP2Paths, rpCompletion).

Guillaume Gricourt https://training.galaxyproject.org/training-material/hall-of-fame/guillaume-gricourt/ Thomas Duigou https://training.galaxyproject.org/training-material/hall-of-fame/tduigou/ Kenza Bazi-Kabbaj https://training.galaxyproject.org/training-material/hall-of-fame/kenza12/ Joan Hérisson https://training.galaxyproject.org/training-material/hall-of-fame/breakthewall/ Ioana Popescu https://training.galaxyproject.org/training-material/hall-of-fame/ioanagry/ Jean-Loup Faulon https://training.galaxyproject.org/training-material/hall-of-fame/jfaulon/ Cristóbal Gallardo https://training.galaxyproject.org/training-material/hall-of-fame/gallardoalba/ Saskia Hiltemann https://training.galaxyproject.org/training-material/hall-of-fame/shiltemann/ https://training.galaxyproject.org/training-material/topics/synthetic-biology/tutorials/retrosynthesis_analysis/recordings/#tutorial-recording-23-june-2022 2022-06-23T00:00:00+00:00

A 5M long recording is now available.

Joan Hérisson https://training.galaxyproject.org/training-material/hall-of-fame/breakthewall/ https://training.galaxyproject.org/training-material/topics/synthetic-biology/tutorials/basic_assembly_analysis/workflows/Genetic_Design_BASIC_Assembly.html 2022-05-12T13:33:35+00:00

Design plasmids encoding predicted pathways by using the BASIC assembly method.

https://training.galaxyproject.org/training-material/topics/synthetic-biology/tutorials/basic_assembly_analysis/tutorial.html 2022-05-12T13:33:35+00:00

Synthetic biology is a novel engineering discipline which requires computational tools for the design of metabolic pathways for the production of chemicals such as SynBioCAD portal which is the first Galaxy set of tools for synthetic biology and metabolic engineering (Hérisson et al. 2022).

Kenza Bazi-Kabbaj https://training.galaxyproject.org/training-material/hall-of-fame/kenza12/ Thomas Duigou https://training.galaxyproject.org/training-material/hall-of-fame/tduigou/ Joan Hérisson https://training.galaxyproject.org/training-material/hall-of-fame/breakthewall/ Guillaume Gricourt https://training.galaxyproject.org/training-material/hall-of-fame/guillaume-gricourt/ Ioana Popescu https://training.galaxyproject.org/training-material/hall-of-fame/ioanagry/ Jean-Loup Faulon https://training.galaxyproject.org/training-material/hall-of-fame/jfaulon/ Helena Rasche https://training.galaxyproject.org/training-material/hall-of-fame/hexylena/ Kenza Bazi-Kabbaj https://training.galaxyproject.org/training-material/hall-of-fame/kenza12/ Saskia Hiltemann https://training.galaxyproject.org/training-material/hall-of-fame/shiltemann/ https://training.galaxyproject.org/training-material/topics/synthetic-biology/tutorials/basic_assembly_analysis/recordings/#tutorial-recording-11-may-2022 2022-05-11T00:00:00+00:00

A 3M long recording is now available.

Joan Hérisson https://training.galaxyproject.org/training-material/hall-of-fame/breakthewall/