Imaging

Lesson Slides Hands-on Recordings Input dataset Workflows
Analyse HeLa fluorescence siRNA screen
End-to-End Tissue Microarray Image Analysis with Galaxy-ME
Introduction to Image Analysis using Galaxy
Nucleoli segmentation and feature extraction using CellProfiler
Object tracking using CellProfiler
Overview of the Galaxy OMERO-suite - Upload images and metadata in OMERO using Galaxy
Parameter tuning and optimization - Evaluating nuclei segmentation with Galaxy
Quantification of single-molecule RNA fluorescence in situ hybridization (smFISH) in yeast cell lines
Tracking of mitochondria and capturing mitoflashes
Using BioImage.IO models for image analysis in Galaxy
Voronoi segmentation
FAIR Bioimage Metadata
REMBI - Recommended Metadata for Biological Images – metadata guidelines for bioimaging data

Proteomics

Lesson Slides Hands-on Recordings Input dataset Workflows
Mass spectrometry imaging: Loading and exploring MSI data