GTN Learning Pathway

A graphic depicting a winding path from a start symbol to a trophy, with tutorials along the way
We recommend you follow the tutorials in the order presented on this page. They have been selected to fit together and build up your knowledge step by step. If a lesson has both slides and a tutorial, we recommend you start with the slides, then proceed with the tutorial.

Genome annotation for prokaryotes

Learn how to annotate a prokaryotic genome sequence: find the position and function of genes, and even set up a manual curation environment with Apollo.

Module 1: Introduction

General introduction to genome annotation

Lesson Slides Hands-on Recordings
Introduction to Genome Annotation

Module 2: Gene calling and functional annotation

In this module you will learn to run the Funannotate tool suite to find the position of genes and to functionally annotate them

Lesson Slides Hands-on Recordings
Genome annotation with Prokka

Module 3: Manual curation

Automatic annotation is rarely perfect, in this module you will learn how to start a collaborative manual curation project using Galaxy and Apollo

Lesson Slides Hands-on Recordings
Refining Genome Annotations with Apollo (prokaryotes)

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This material was funded by:

AvatarErasmus+ Programme