Miaomiao Zhou

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Tutorials

Assembly / Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data 📝
Assembly / Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data) 📝
Genome Annotation / Identification of AMR genes in an assembled bacterial genome 📝

GitHub Activity

Issues Reported

News

Assembly visualisation from the Bandage tool

New Tutorials: Genome assembly of a MRSA genome

24 March 2021

Two new assembly tutorials have been added to the GTN! These tutorials walk you through the process of assembling MRSA strains from real-world datasets. MRSA stands for “Methicillin- resistant Staphylococcus aureus, it is resistance to several antibiotics and is a common source of hospital-acquired infections and outbreaks. In this tutorial you will assess the quality of your data, perform an assembly and assess its quality, analyze your data for the presence of antimicrobial resistance (AMR) genes, and annotate the genome using Prokka and JBrowse.

new tutorial assembly mrsa amr nanopore illumina

External Links

m.zhou1@avans.nl

0000-0003-4426-1758

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