Scanpy filter: mark and subsample

toolshed.g2.bx.psu.edu/repos/iuc/scanpy_filter/scanpy_filter/1.11.5+galaxy0

Metadata

Links

bio.tools:

EDAM Operations

Differential gene expression profiling

EDAM Topics

Observed Tool Versions

Within GTN tutorials

1.11.5+galaxy0

1.10.2+galaxy3

1.10.2+galaxy0

1.9.6+galaxy3

1.7.1+galaxy0

Relevant Tutorials

Single Cell / Pseudobulk Analysis with Decoupler and EdgeR
Single Cell / Single-cell ATAC-seq standard processing with SnapATAC2
Single Cell / Filter, plot and explore single-cell RNA-seq data with Scanpy
Single Cell / Analysis of plant scRNA-Seq Data with Scanpy
Single Cell / Clustering 3K PBMCs with Scanpy
Single Cell / Batch Correction and Integration with Seurat or Scanpy