Workflows

These workflows are associated with Finding the muon stopping site with pymuon-suite in Galaxy

To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.

Finding the Muon Stopping Site: pymuon-suite in Galaxy
Muon Spectroscopy Computational Project

Last updated Dec 8, 2023

Launch in Tutorial Mode question
License: MIT
Tests: ✅ Results: Not yet automated

flowchart TD
  0["ℹ️ Input Dataset\nCopper-out.cell"];
  style 0 stroke:#2c3143,stroke-width:4px;
  1["ℹ️ Input Dataset\nCopper.den_fmt"];
  style 1 stroke:#2c3143,stroke-width:4px;
  2["ℹ️ Input Dataset\nCopper.castep"];
  style 2 stroke:#2c3143,stroke-width:4px;
  3["PyMuonSuite AIRSS UEP Optimise"];
  2 -->|output| 3;
  1 -->|output| 3;
  0 -->|output| 3;
  f3be7cd2-3974-49f2-aa0e-96c79b4ab34c["Output\nAll muons in host material"];
  3 --> f3be7cd2-3974-49f2-aa0e-96c79b4ab34c;
  style f3be7cd2-3974-49f2-aa0e-96c79b4ab34c stroke:#2c3143,stroke-width:4px;
  4["PyMuonSuite AIRSS Cluster"];
  3 -->|uep_results| 4;
	

Importing into Galaxy

Below are the instructions for importing these workflows directly into your Galaxy server of choice to start using them!
Hands-on: Importing a workflow
  • Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
  • Click on galaxy-upload Import at the top-right of the screen
  • Provide your workflow
    • Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”
    • Option 2: Upload the workflow file in the box labelled “Archived Workflow File”
  • Click the Import workflow button

Below is a short video demonstrating how to import a workflow from GitHub using this procedure:

Video: Importing a workflow from URL