Workflows

These workflows are associated with Downstream Single-cell RNA analysis with RaceID

To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.

RaceID Workflow

Last updated Nov 12, 2022

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Tests: ❌ Results: Not yet automated

flowchart TD
  0["ℹ️ Input Dataset\nTabular Matrix"];
  style 0 stroke:#2c3143,stroke-width:4px;
  1["Initial processing using RaceID"];
  0 -->|output| 1;
  2["Clustering using RaceID"];
  1 -->|outrdat| 2;
  3["Lineage computation using StemID"];
  2 -->|outrdat| 3;
  4["Cluster Inspection using RaceID"];
  2 -->|outrdat| 4;
  5["Cluster Inspection using RaceID"];
  2 -->|outrdat| 5;
  6["Cluster Inspection using RaceID"];
  2 -->|outrdat| 6;
  7["Lineage Branch Analysis using StemID"];
  3 -->|outrdat| 7;
  8["Lineage Branch Analysis using StemID"];
  3 -->|outrdat| 8;
	

Importing into Galaxy

Below are the instructions for importing these workflows directly into your Galaxy server of choice to start using them!
Hands-on: Importing a workflow
  • Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
  • Click on galaxy-upload Import at the top-right of the screen
  • Provide your workflow
    • Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”
    • Option 2: Upload the workflow file in the box labelled “Archived Workflow File”
  • Click the Import workflow button

Below is a short video demonstrating how to import a workflow from GitHub using this procedure:

Video: Importing a workflow from URL