Workflows
These workflows are associated with Label-free data analysis using MaxQuant
To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.
Proteomics: MaxQuant workflow
Last updated Nov 15, 2020
Launch in Tutorial Mode
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Tests: ✅
Results: Not yet automated
flowchart TD 0["Input dataset"]; 1["Input dataset"]; 2["Input dataset"]; 3["MaxQuant"]; 4["Filter"]; 5["Select"]; 6["Cut"]; 7["Sort"]; 8["Compute"]; 9["Sort"]; 10["Compute"]; 11["Cut"]; 12["Compute"]; 13["Histogram"]; 0 -->|output| 3; 1 -->|output| 3; 2 -->|output| 3; 3 -->|proteinGroups| 4; 4 -->|out_file1| 5; 5 -->|out_file1| 6; 6 -->|out_file1| 7; 6 -->|out_file1| 8; 7 -->|outfile| 9; 8 -->|out_file1| 10; 10 -->|out_file1| 11; 10 -->|out_file1| 12; 12 -->|out_file1| 13;
Importing into Galaxy
Below are the instructions for importing these workflows directly into your Galaxy server of choice to start using them!Hands-on: Importing a workflow
- Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
- Click on galaxy-upload Import at the top-right of the screen
- Provide your workflow
- Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”
- Option 2: Upload the workflow file in the box labelled “Archived Workflow File”
- Click the Import workflow button
Below is a short video demonstrating how to import a workflow from GitHub using this procedure: