Workflows

These workflows are associated with Label-free data analysis using MaxQuant

To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.

flowchart TD
  0["Input dataset"];
  1["Input dataset"];
  2["Input dataset"];
  3["MaxQuant"];
  4["Filter"];
  5["Select"];
  6["Cut"];
  7["Sort"];
  8["Compute"];
  9["Sort"];
  10["Compute"];
  11["Cut"];
  12["Compute"];
  13["Histogram"];
  0 -->|output| 3;
  1 -->|output| 3;
  2 -->|output| 3;
  3 -->|proteinGroups| 4;
  4 -->|out_file1| 5;
  5 -->|out_file1| 6;
  6 -->|out_file1| 7;
  6 -->|out_file1| 8;
  7 -->|outfile| 9;
  8 -->|out_file1| 10;
  10 -->|out_file1| 11;
  10 -->|out_file1| 12;
  12 -->|out_file1| 13;

	

Importing into Galaxy

Hands-on: Importing a workflow

• Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
• Click on galaxy-upload Import at the top-right of the screen
• Provide your workflow
  • Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”
  • Option 2: Upload the workflow file in the box labelled “Archived Workflow File”
• Click the Import workflow button

Below is a short video demonstrating how to import a workflow from GitHub using this procedure: