Rahmot Afolabi

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

FAQs

• Why is amplification more of an issue in scRNA-seq than RNA-seq?
• I can’t find the “Analyze Data” button
• Why do we do dimension reduction and then clustering? Why not just cluster on the actual data?
• UCSC - I fetched data from a remote website but now I’m logged out of Galaxy and my data is gone?
• My Galaxy looks different than in the tutorial/video
• What exactly is a ‘Gene profile’?
• My jobs are not running / I cannot see the history overview menu
• RNAstar: Why do we set 36 for 'Length of the genomic sequence around annotated junctions'?
• Can RNA-seq techniques be applied to scRNA-seq?
• I’m using the same training data, tools, and parameters as the tutorial, but I get a different number of transcripts with a significant change in gene expression between the G1E and megakaryocyte cellular states. Why?
• I got slightly different numbers than were in the tutorial
• Why do we only consider highly variable genes?

GitHub Activity

github Issues Reported

8 Merged Pull Requests

See all of the github Pull Requests and github Commits by Rahmot Afolabi.

• Added Reference-based RNA-seq FAQ files
• Added FAQ files to intro and transcriptomics topic
• Added FAQ files to transcriptomics topic
• Added speaker notes to some slides
• Update tutorial_hands_on.html

Reviewed 4 PRs

We love our community reviewing each other's work!

• Added FAQ files to intro and transcriptomics topic
• Update tutorial_hands_on.html
• Added speaker notes to some slides
• Add < rahmot > as contributor

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