---
destination:
  type: library
  name: GTN - Material
  description: Galaxy Training Network Material
  synopsis: Galaxy Training Network Material. See https://training.galaxyproject.org
items:
- name: Variant Analysis
  topic_id: variant-analysis
  description: Tutorial input datasets for GTN topic 'Variant Analysis'
  topic_readme: |
    Genetic differences (variants) between healthy and diseased tissue,
    between individuals of a population, or between strains of an organism
    can provide mechanistic insight into disease processes and the natural
    function of affected genes.

    The tutorials in this section show how to detect evidence for
    genetic variants in next-generation sequencing data, a process termed
    variant calling.

    Of equal importance, they also demonstrate how you can interpret, for
    a range of different organisms, the resulting sets of variants by
    predicting their molecular effects on genes and proteins, by
    annotating previously observed variants with published knowledge, and
    by trying to link phenotypes of the sequenced samples to their variant
    genotypes.
  items:
  - name: 'Working with Beacon V2: A Comprehensive Guide to Creating, Uploading, and
      Searching for Variants with Beacons'
    tutorial_id: beaconise_1000hg
    description: 'Input datasets for ''Working with Beacon V2: A Comprehensive Guide
      to Creating, Uploading, and Searching for Variants with Beacons'''
    tutorial_readme: 'This folder contains input datasets for the GTN tutorial ''[Working
      with Beacon V2: A Comprehensive Guide to Creating, Uploading, and Searching
      for Variants with Beacons](https://training.galaxyproject.org/topics/variant-analysis/tutorials/beaconise_1000hg/tutorial.html)'''
    items:
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      description: latest
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