{
    "a_galaxy_workflow": "true",
    "annotation": "WF for SIMORGH training",
    "comments": [
        {
            "child_comments": [
                1
            ],
            "child_steps": [
                0,
                1,
                2,
                3,
                4,
                8,
                11,
                14,
                19
            ],
            "color": "green",
            "data": {
                "title": "Frame"
            },
            "id": 0,
            "position": [
                0,
                470
            ],
            "size": [
                1240,
                552.2
            ],
            "type": "frame"
        },
        {
            "child_comments": [
                3
            ],
            "child_steps": [
                5,
                6,
                20
            ],
            "color": "blue",
            "data": {
                "title": "Frame"
            },
            "id": 2,
            "position": [
                1260,
                230
            ],
            "size": [
                240,
                485.5
            ],
            "type": "frame"
        },
        {
            "child_comments": [
                5
            ],
            "child_steps": [
                9,
                10,
                12,
                13
            ],
            "color": "orange",
            "data": {
                "title": "Frame"
            },
            "id": 4,
            "position": [
                1510,
                230
            ],
            "size": [
                490,
                343.5
            ],
            "type": "frame"
        },
        {
            "child_comments": [
                7,
                8
            ],
            "child_steps": [
                15,
                16,
                17,
                18
            ],
            "color": "yellow",
            "data": {
                "title": "Frame"
            },
            "id": 6,
            "position": [
                2060,
                0
            ],
            "size": [
                540,
                840
            ],
            "type": "frame"
        },
        {
            "color": "black",
            "data": {
                "bold": true,
                "size": 2,
                "text": "Colabfold prediction"
            },
            "id": 1,
            "position": [
                580,
                510
            ],
            "size": [
                360,
                40
            ],
            "type": "text"
        },
        {
            "color": "black",
            "data": {
                "bold": true,
                "size": 2,
                "text": "Inputs"
            },
            "id": 3,
            "position": [
                1310,
                270
            ],
            "size": [
                130,
                40
            ],
            "type": "text"
        },
        {
            "color": "black",
            "data": {
                "bold": true,
                "size": 2,
                "text": "PDB preprocessing"
            },
            "id": 5,
            "position": [
                1590,
                270
            ],
            "size": [
                320,
                40
            ],
            "type": "text"
        },
        {
            "color": "black",
            "data": {
                "bold": true,
                "size": 2,
                "text": "Simorgh<br>&nbsp; &nbsp; &nbsp;+<br>&nbsp;BBflow"
            },
            "id": 7,
            "position": [
                2100,
                40
            ],
            "size": [
                150,
                110
            ],
            "type": "text"
        },
        {
            "color": "black",
            "data": {
                "bold": true,
                "size": 2,
                "text": "Simorgh"
            },
            "id": 8,
            "position": [
                2400,
                100
            ],
            "size": [
                160,
                50
            ],
            "type": "text"
        }
    ],
    "creator": [
        {
            "class": "Person",
            "identifier": "0000-0003-1329-3044",
            "name": "Amirhossein Naghsh Nilchi"
        }
    ],
    "format-version": "0.1",
    "license": "MIT",
    "name": "simorgh",
    "readme": "Workflow related to the SIMORGH galaxy training. Comparing ligand-binding site predictions across different protein structure modalities using SIMORGH",
    "report": {
        "markdown": "\n# Workflow Execution Report\n\n## Workflow Inputs\n```galaxy\ninvocation_inputs()\n```\n\n## Workflow Outputs\n```galaxy\ninvocation_outputs()\n```\n\n## Workflow\n```galaxy\nworkflow_display()\n```\n"
    },
    "steps": {
        "0": {
            "annotation": "fasta header",
            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1",
            "errors": null,
            "id": 0,
            "input_connections": {},
            "inputs": [],
            "label": null,
            "name": "Compose text parameter value",
            "outputs": [
                {
                    "name": "out1",
                    "type": "expression.json"
                }
            ],
            "position": {
                "left": 20,
                "top": 560
            },
            "post_job_actions": {
                "HideDatasetActionout1": {
                    "action_arguments": {},
                    "action_type": "HideDatasetAction",
                    "output_name": "out1"
                }
            },
            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1",
            "tool_shed_repository": {
                "changeset_revision": "e188c9826e0f",
                "name": "compose_text_param",
                "owner": "iuc",
                "tool_shed": "toolshed.g2.bx.psu.edu"
            },
            "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \">6N5J_1|Chains A, B|Signal recognition particle receptor FtsY|Escherichia coli (strain K12) (83333)\"}}], \"__page__\": 0, \"__rerun_remap_job_id__\": null}",
            "tool_uuid": null,
            "tool_version": "0.1.1",
            "type": "tool",
            "uuid": "b50fe94b-4fe4-475a-855e-37df047b1eb6",
            "when": null,
            "workflow_outputs": []
        },
        "1": {
            "annotation": "fasta sequence line1",
            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1",
            "errors": null,
            "id": 1,
            "input_connections": {},
            "inputs": [],
            "label": null,
            "name": "Compose text parameter value",
            "outputs": [
                {
                    "name": "out1",
                    "type": "expression.json"
                }
            ],
            "position": {
                "left": 20,
                "top": 650
            },
            "post_job_actions": {
                "HideDatasetActionout1": {
                    "action_arguments": {},
                    "action_type": "HideDatasetAction",
                    "output_name": "out1"
                }
            },
            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1",
            "tool_shed_repository": {
                "changeset_revision": "e188c9826e0f",
                "name": "compose_text_param",
                "owner": "iuc",
                "tool_shed": "toolshed.g2.bx.psu.edu"
            },
            "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"GFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTEGASRKQLRDAEALYGLLKEE\"}}], \"__page__\": 0, \"__rerun_remap_job_id__\": null}",
            "tool_uuid": null,
            "tool_version": "0.1.1",
            "type": "tool",
            "uuid": "eabce177-3f54-4929-8903-e9415f7e2cd9",
            "when": null,
            "workflow_outputs": []
        },
        "2": {
            "annotation": "fasta sequence line2",
            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1",
            "errors": null,
            "id": 2,
            "input_connections": {},
            "inputs": [],
            "label": null,
            "name": "Compose text parameter value",
            "outputs": [
                {
                    "name": "out1",
                    "type": "expression.json"
                }
            ],
            "position": {
                "left": 20,
                "top": 740
            },
            "post_job_actions": {
                "HideDatasetActionout1": {
                    "action_arguments": {},
                    "action_type": "HideDatasetAction",
                    "output_name": "out1"
                }
            },
            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1",
            "tool_shed_repository": {
                "changeset_revision": "e188c9826e0f",
                "name": "compose_text_param",
                "owner": "iuc",
                "tool_shed": "toolshed.g2.bx.psu.edu"
            },
            "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"MGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQ\"}}], \"__page__\": 0, \"__rerun_remap_job_id__\": null}",
            "tool_uuid": null,
            "tool_version": "0.1.1",
            "type": "tool",
            "uuid": "ba6c013e-26d1-4936-a55b-80d6dafe718d",
            "when": null,
            "workflow_outputs": []
        },
        "3": {
            "annotation": "fasta sequence line3",
            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1",
            "errors": null,
            "id": 3,
            "input_connections": {},
            "inputs": [],
            "label": null,
            "name": "Compose text parameter value",
            "outputs": [
                {
                    "name": "out1",
                    "type": "expression.json"
                }
            ],
            "position": {
                "left": 20,
                "top": 830
            },
            "post_job_actions": {
                "HideDatasetActionout1": {
                    "action_arguments": {},
                    "action_type": "HideDatasetAction",
                    "output_name": "out1"
                }
            },
            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1",
            "tool_shed_repository": {
                "changeset_revision": "e188c9826e0f",
                "name": "compose_text_param",
                "owner": "iuc",
                "tool_shed": "toolshed.g2.bx.psu.edu"
            },
            "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"HTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLF\"}}], \"__page__\": 0, \"__rerun_remap_job_id__\": null}",
            "tool_uuid": null,
            "tool_version": "0.1.1",
            "type": "tool",
            "uuid": "18b11373-4850-47c0-86d8-c904ef88dc57",
            "when": null,
            "workflow_outputs": []
        },
        "4": {
            "annotation": "fasta sequence line4",
            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1",
            "errors": null,
            "id": 4,
            "input_connections": {},
            "inputs": [],
            "label": null,
            "name": "Compose text parameter value",
            "outputs": [
                {
                    "name": "out1",
                    "type": "expression.json"
                }
            ],
            "position": {
                "left": 20,
                "top": 920
            },
            "post_job_actions": {
                "HideDatasetActionout1": {
                    "action_arguments": {},
                    "action_type": "HideDatasetAction",
                    "output_name": "out1"
                }
            },
            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1",
            "tool_shed_repository": {
                "changeset_revision": "e188c9826e0f",
                "name": "compose_text_param",
                "owner": "iuc",
                "tool_shed": "toolshed.g2.bx.psu.edu"
            },
            "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"HEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALFARED\"}}], \"__page__\": 0, \"__rerun_remap_job_id__\": null}",
            "tool_uuid": null,
            "tool_version": "0.1.1",
            "type": "tool",
            "uuid": "2a0964ca-409a-4f7d-8d72-9ebdc1ebdc22",
            "when": null,
            "workflow_outputs": []
        },
        "5": {
            "annotation": "",
            "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/get_pdb/get_pdb/0.1.1",
            "errors": null,
            "id": 5,
            "input_connections": {},
            "inputs": [],
            "label": null,
            "name": "Get PDB file",
            "outputs": [
                {
                    "name": "output",
                    "type": "pdb"
                }
            ],
            "position": {
                "left": 1280,
                "top": 320
            },
            "post_job_actions": {
                "ChangeDatatypeActionoutput": {
                    "action_arguments": {
                        "newtype": "pdb"
                    },
                    "action_type": "ChangeDatatypeAction",
                    "output_name": "output"
                },
                "RenameDatasetActionoutput": {
                    "action_arguments": {
                        "newname": "6N5J PDB"
                    },
                    "action_type": "RenameDatasetAction",
                    "output_name": "output"
                },
                "TagDatasetActionoutput": {
                    "action_arguments": {
                        "tags": "name:apo"
                    },
                    "action_type": "TagDatasetAction",
                    "output_name": "output"
                }
            },
            "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/get_pdb/get_pdb/0.1.1",
            "tool_shed_repository": {
                "changeset_revision": "0a0ef624cb05",
                "name": "get_pdb",
                "owner": "bgruening",
                "tool_shed": "toolshed.g2.bx.psu.edu"
            },
            "tool_state": "{\"pdb_id\": \"6N5J\", \"__page__\": 0, \"__rerun_remap_job_id__\": null}",
            "tool_uuid": null,
            "tool_version": "0.1.1",
            "type": "tool",
            "uuid": "7568558b-6189-4e61-8ce3-0ec0e1cd22b9",
            "when": null,
            "workflow_outputs": []
        },
        "6": {
            "annotation": "",
            "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/get_pdb/get_pdb/0.1.1",
            "errors": null,
            "id": 6,
            "input_connections": {},
            "inputs": [],
            "label": null,
            "name": "Get PDB file",
            "outputs": [
                {
                    "name": "output",
                    "type": "pdb"
                }
            ],
            "position": {
                "left": 1280,
                "top": 440
            },
            "post_job_actions": {
                "ChangeDatatypeActionoutput": {
                    "action_arguments": {
                        "newtype": "pdb"
                    },
                    "action_type": "ChangeDatatypeAction",
                    "output_name": "output"
                },
                "RenameDatasetActionoutput": {
                    "action_arguments": {
                        "newname": "6FQD PDB"
                    },
                    "action_type": "RenameDatasetAction",
                    "output_name": "output"
                },
                "TagDatasetActionoutput": {
                    "action_arguments": {
                        "tags": "name:holo"
                    },
                    "action_type": "TagDatasetAction",
                    "output_name": "output"
                }
            },
            "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/get_pdb/get_pdb/0.1.1",
            "tool_shed_repository": {
                "changeset_revision": "0a0ef624cb05",
                "name": "get_pdb",
                "owner": "bgruening",
                "tool_shed": "toolshed.g2.bx.psu.edu"
            },
            "tool_state": "{\"pdb_id\": \"6FQD\", \"__page__\": 0, \"__rerun_remap_job_id__\": null}",
            "tool_uuid": null,
            "tool_version": "0.1.1",
            "type": "tool",
            "uuid": "c6904546-88d8-4973-8f0d-6c876d32e4f2",
            "when": null,
            "workflow_outputs": []
        },
        "7": {
            "annotation": "Simorgh is not permitted for commercial work.",
            "content_id": null,
            "errors": null,
            "id": 7,
            "input_connections": {},
            "inputs": [
                {
                    "description": "Simorgh is not permitted for commercial work.",
                    "name": "I certify that I am NOT using this tool for commercial purposes."
                }
            ],
            "label": "I certify that I am NOT using this tool for commercial purposes.",
            "name": "Input parameter",
            "outputs": [],
            "position": {
                "left": 1500,
                "top": 0
            },
            "tool_id": null,
            "tool_state": "{\"default\": false, \"validators\": [], \"parameter_type\": \"boolean\", \"optional\": false}",
            "tool_version": null,
            "type": "parameter_input",
            "uuid": "03e9d7f8-3f2f-4095-89db-70adff35434d",
            "when": null,
            "workflow_outputs": []
        },
        "8": {
            "annotation": "",
            "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_text_file_with_recurring_lines/9.11+galaxy0",
            "errors": null,
            "id": 8,
            "input_connections": {
                "token_set_0|line": {
                    "id": 0,
                    "output_name": "out1"
                },
                "token_set_1|line": {
                    "id": 1,
                    "output_name": "out1"
                },
                "token_set_2|line": {
                    "id": 2,
                    "output_name": "out1"
                },
                "token_set_3|line": {
                    "id": 3,
                    "output_name": "out1"
                },
                "token_set_4|line": {
                    "id": 4,
                    "output_name": "out1"
                }
            },
            "inputs": [],
            "label": null,
            "name": "Create text file",
            "outputs": [
                {
                    "name": "outfile",
                    "type": "txt"
                }
            ],
            "position": {
                "left": 270,
                "top": 560
            },
            "post_job_actions": {
                "HideDatasetActionoutfile": {
                    "action_arguments": {},
                    "action_type": "HideDatasetAction",
                    "output_name": "outfile"
                }
            },
            "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_text_file_with_recurring_lines/9.11+galaxy0",
            "tool_shed_repository": {
                "changeset_revision": "30b60202d990",
                "name": "text_processing",
                "owner": "bgruening",
                "tool_shed": "toolshed.g2.bx.psu.edu"
            },
            "tool_state": "{\"token_set\": [{\"__index__\": 0, \"line\": {\"__class__\": \"ConnectedValue\"}, \"repeat_select\": {\"repeat_select_opts\": \"user\", \"__current_case__\": 0, \"times\": \"1\"}}, {\"__index__\": 1, \"line\": {\"__class__\": \"ConnectedValue\"}, \"repeat_select\": {\"repeat_select_opts\": \"user\", \"__current_case__\": 0, \"times\": \"1\"}}, {\"__index__\": 2, \"line\": {\"__class__\": \"ConnectedValue\"}, \"repeat_select\": {\"repeat_select_opts\": \"user\", \"__current_case__\": 0, \"times\": \"1\"}}, {\"__index__\": 3, \"line\": {\"__class__\": \"ConnectedValue\"}, \"repeat_select\": {\"repeat_select_opts\": \"user\", \"__current_case__\": 0, \"times\": \"1\"}}, {\"__index__\": 4, \"line\": {\"__class__\": \"ConnectedValue\"}, \"repeat_select\": {\"repeat_select_opts\": \"user\", \"__current_case__\": 0, \"times\": \"1\"}}], \"__page__\": 0, \"__rerun_remap_job_id__\": null}",
            "tool_uuid": null,
            "tool_version": "9.11+galaxy0",
            "type": "tool",
            "uuid": "5253b130-7ce0-421d-8203-5f9e2ce84c67",
            "when": null,
            "workflow_outputs": []
        },
        "9": {
            "annotation": "",
            "content_id": "toolshed.g2.bx.psu.edu/repos/chemteam/pdbfixer/pdbfixer/1.8.1+galaxy0",
            "errors": null,
            "id": 9,
            "input_connections": {
                "pdb_input": {
                    "id": 5,
                    "output_name": "output"
                }
            },
            "inputs": [],
            "label": null,
            "name": "PDBFixer",
            "outputs": [
                {
                    "name": "output",
                    "type": "pdb"
                }
            ],
            "position": {
                "left": 1530,
                "top": 320
            },
            "post_job_actions": {
                "RenameDatasetActionoutput": {
                    "action_arguments": {
                        "newname": "6N5J PDB fixed"
                    },
                    "action_type": "RenameDatasetAction",
                    "output_name": "output"
                }
            },
            "tool_id": "toolshed.g2.bx.psu.edu/repos/chemteam/pdbfixer/pdbfixer/1.8.1+galaxy0",
            "tool_shed_repository": {
                "changeset_revision": "24bf162ef74b",
                "name": "pdbfixer",
                "owner": "chemteam",
                "tool_shed": "toolshed.g2.bx.psu.edu"
            },
            "tool_state": "{\"add_atoms\": \"heavy\", \"add_residues\": false, \"keep_heterogens\": \"none\", \"pdb_input\": {\"__class__\": \"ConnectedValue\"}, \"ph\": \"7.0\", \"replace_nonstandard\": true, \"solvent\": {\"box\": {\"water_box\": \"false\", \"__current_case__\": 1}, \"positive_ion\": \"Na+\", \"negative_ion\": \"Cl-\", \"ionic_strength\": \"0.0\"}, \"__page__\": 0, \"__rerun_remap_job_id__\": null}",
            "tool_uuid": null,
            "tool_version": "1.8.1+galaxy0",
            "type": "tool",
            "uuid": "b9178bbc-d6d2-47b0-8324-5602d240efcf",
            "when": null,
            "workflow_outputs": []
        },
        "10": {
            "annotation": "",
            "content_id": "toolshed.g2.bx.psu.edu/repos/chemteam/pdbfixer/pdbfixer/1.8.1+galaxy0",
            "errors": null,
            "id": 10,
            "input_connections": {
                "pdb_input": {
                    "id": 6,
                    "output_name": "output"
                }
            },
            "inputs": [],
            "label": null,
            "name": "PDBFixer",
            "outputs": [
                {
                    "name": "output",
                    "type": "pdb"
                }
            ],
            "position": {
                "left": 1530,
                "top": 440
            },
            "post_job_actions": {
                "RenameDatasetActionoutput": {
                    "action_arguments": {
                        "newname": "6FQD PDB fixed"
                    },
                    "action_type": "RenameDatasetAction",
                    "output_name": "output"
                }
            },
            "tool_id": "toolshed.g2.bx.psu.edu/repos/chemteam/pdbfixer/pdbfixer/1.8.1+galaxy0",
            "tool_shed_repository": {
                "changeset_revision": "24bf162ef74b",
                "name": "pdbfixer",
                "owner": "chemteam",
                "tool_shed": "toolshed.g2.bx.psu.edu"
            },
            "tool_state": "{\"add_atoms\": \"heavy\", \"add_residues\": false, \"keep_heterogens\": \"none\", \"pdb_input\": {\"__class__\": \"ConnectedValue\"}, \"ph\": \"7.0\", \"replace_nonstandard\": true, \"solvent\": {\"box\": {\"water_box\": \"false\", \"__current_case__\": 1}, \"positive_ion\": \"Na+\", \"negative_ion\": \"Cl-\", \"ionic_strength\": \"0.0\"}, \"__page__\": 0, \"__rerun_remap_job_id__\": null}",
            "tool_uuid": null,
            "tool_version": "1.8.1+galaxy0",
            "type": "tool",
            "uuid": "7563c40f-66b1-4433-b0bf-c4447da62be2",
            "when": null,
            "workflow_outputs": []
        },
        "11": {
            "annotation": "",
            "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/9.11+galaxy0",
            "errors": null,
            "id": 11,
            "input_connections": {
                "infile": {
                    "id": 8,
                    "output_name": "outfile"
                }
            },
            "inputs": [],
            "label": null,
            "name": "Replace Text",
            "outputs": [
                {
                    "name": "outfile",
                    "type": "input"
                }
            ],
            "position": {
                "left": 520,
                "top": 560
            },
            "post_job_actions": {
                "ChangeDatatypeActionoutfile": {
                    "action_arguments": {
                        "newtype": "fasta"
                    },
                    "action_type": "ChangeDatatypeAction",
                    "output_name": "outfile"
                },
                "RenameDatasetActionoutfile": {
                    "action_arguments": {
                        "newname": "FtsY.fasta"
                    },
                    "action_type": "RenameDatasetAction",
                    "output_name": "outfile"
                }
            },
            "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/9.11+galaxy0",
            "tool_shed_repository": {
                "changeset_revision": "30b60202d990",
                "name": "text_processing",
                "owner": "bgruening",
                "tool_shed": "toolshed.g2.bx.psu.edu"
            },
            "tool_state": "{\"infile\": {\"__class__\": \"ConnectedValue\"}, \"replacements\": [{\"__index__\": 0, \"find_pattern\": \"X6N5J_1|Chains A\", \"replace_pattern\": \">6N5J_1|Chains A\", \"sed_options\": null}], \"__page__\": 0, \"__rerun_remap_job_id__\": null}",
            "tool_uuid": null,
            "tool_version": "9.11+galaxy0",
            "type": "tool",
            "uuid": "a33b201b-9d60-423e-b20a-cd0e39f9831b",
            "when": null,
            "workflow_outputs": []
        },
        "12": {
            "annotation": "remove chain A",
            "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.11+galaxy0",
            "errors": null,
            "id": 12,
            "input_connections": {
                "infile": {
                    "id": 9,
                    "output_name": "output"
                }
            },
            "inputs": [],
            "label": null,
            "name": "Text reformatting",
            "outputs": [
                {
                    "name": "outfile",
                    "type": "input"
                }
            ],
            "position": {
                "left": 1780,
                "top": 320
            },
            "post_job_actions": {
                "RenameDatasetActionoutfile": {
                    "action_arguments": {
                        "newname": "6N5J PDB fixed chainB"
                    },
                    "action_type": "RenameDatasetAction",
                    "output_name": "outfile"
                }
            },
            "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.11+galaxy0",
            "tool_shed_repository": {
                "changeset_revision": "30b60202d990",
                "name": "text_processing",
                "owner": "bgruening",
                "tool_shed": "toolshed.g2.bx.psu.edu"
            },
            "tool_state": "{\"code\": \"{\\n  rectype = substr($0,1,6)\\n  chain = substr($0,22,1)\\n  if ((rectype ~ /^ATOM/ || rectype ~ /^HETATM/ || rectype ~ /^TER/) && chain == \\\"A\\\") next\\n  print\\n}\", \"infile\": {\"__class__\": \"ConnectedValue\"}, \"variables\": [], \"__page__\": 0, \"__rerun_remap_job_id__\": null}",
            "tool_uuid": null,
            "tool_version": "9.11+galaxy0",
            "type": "tool",
            "uuid": "dec4c70f-3b27-4786-ad51-a616e20dc7f0",
            "when": null,
            "workflow_outputs": []
        },
        "13": {
            "annotation": "remove chain A",
            "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.11+galaxy0",
            "errors": null,
            "id": 13,
            "input_connections": {
                "infile": {
                    "id": 10,
                    "output_name": "output"
                }
            },
            "inputs": [],
            "label": null,
            "name": "Text reformatting",
            "outputs": [
                {
                    "name": "outfile",
                    "type": "input"
                }
            ],
            "position": {
                "left": 1780,
                "top": 440
            },
            "post_job_actions": {
                "RenameDatasetActionoutfile": {
                    "action_arguments": {
                        "newname": "6FQD PDB fixed chainB"
                    },
                    "action_type": "RenameDatasetAction",
                    "output_name": "outfile"
                }
            },
            "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.11+galaxy0",
            "tool_shed_repository": {
                "changeset_revision": "30b60202d990",
                "name": "text_processing",
                "owner": "bgruening",
                "tool_shed": "toolshed.g2.bx.psu.edu"
            },
            "tool_state": "{\"code\": \"{\\n  rectype = substr($0,1,6)\\n  chain = substr($0,22,1)\\n  if ((rectype ~ /^ATOM/ || rectype ~ /^HETATM/ || rectype ~ /^TER/) && chain == \\\"A\\\") next\\n  print\\n}\", \"infile\": {\"__class__\": \"ConnectedValue\"}, \"variables\": [], \"__page__\": 0, \"__rerun_remap_job_id__\": null}",
            "tool_uuid": null,
            "tool_version": "9.11+galaxy0",
            "type": "tool",
            "uuid": "6194128d-5def-4655-a08d-fe93be327d95",
            "when": null,
            "workflow_outputs": []
        },
        "14": {
            "annotation": "",
            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/colabfold_msa/colabfold_msa/1.5.5+galaxy1",
            "errors": null,
            "id": 14,
            "input_connections": {
                "query_type|input": {
                    "id": 11,
                    "output_name": "outfile"
                }
            },
            "inputs": [
                {
                    "description": "runtime parameter for tool Colabfold MSA",
                    "name": "custom_template"
                },
                {
                    "description": "runtime parameter for tool Colabfold MSA",
                    "name": "query_type"
                }
            ],
            "label": null,
            "name": "Colabfold MSA",
            "outputs": [
                {
                    "name": "output",
                    "type": "colab.tar"
                }
            ],
            "position": {
                "left": 770,
                "top": 560
            },
            "post_job_actions": {},
            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/colabfold_msa/colabfold_msa/1.5.5+galaxy1",
            "tool_shed_repository": {
                "changeset_revision": "6fbd935575ce",
                "name": "colabfold_msa",
                "owner": "iuc",
                "tool_shed": "toolshed.g2.bx.psu.edu"
            },
            "tool_state": "{\"custom_template\": {\"__class__\": \"RuntimeValue\"}, \"pair_mode\": \"unpaired_paired\", \"query_type\": {\"select_query_type\": \"fasta\", \"__current_case__\": 0, \"input\": {\"__class__\": \"ConnectedValue\"}, \"select_db\": {\"use_db\": \"yes\", \"__current_case__\": 1, \"msa_mode\": \"mmseqs2_uniref_env\"}}, \"templates\": false, \"__page__\": 0, \"__rerun_remap_job_id__\": null}",
            "tool_uuid": null,
            "tool_version": "1.5.5+galaxy1",
            "type": "tool",
            "uuid": "5e5e3e50-129a-430f-86bc-2b5729983428",
            "when": null,
            "workflow_outputs": []
        },
        "15": {
            "annotation": "",
            "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/simorgh/simorgh/1.0.1+galaxy1",
            "errors": null,
            "id": 15,
            "input_connections": {
                "pdb": {
                    "id": 12,
                    "output_name": "outfile"
                },
                "when": {
                    "id": 7,
                    "output_name": "output"
                }
            },
            "inputs": [],
            "label": null,
            "name": "SIMORGH",
            "outputs": [
                {
                    "name": "pdb_out",
                    "type": "pdb"
                },
                {
                    "name": "bbflow_pdb",
                    "type": "pdb"
                },
                {
                    "name": "viz_out",
                    "type": "html"
                }
            ],
            "position": {
                "left": 2079.9999015444737,
                "top": 159.9930546282368
            },
            "post_job_actions": {
                "RenameDatasetActionbbflow_pdb": {
                    "action_arguments": {
                        "newname": "SIMORGH, BBflow - apo-multi"
                    },
                    "action_type": "RenameDatasetAction",
                    "output_name": "bbflow_pdb"
                },
                "RenameDatasetActionpdb_out": {
                    "action_arguments": {
                        "newname": "SIMORGH, Predicted Structure - apo-multi"
                    },
                    "action_type": "RenameDatasetAction",
                    "output_name": "pdb_out"
                },
                "RenameDatasetActionviz_out": {
                    "action_arguments": {
                        "newname": "SIMORGH, visualization - apo-multi"
                    },
                    "action_type": "RenameDatasetAction",
                    "output_name": "viz_out"
                }
            },
            "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/simorgh/simorgh/1.0.1+galaxy1",
            "tool_shed_repository": {
                "changeset_revision": "7cbaa6fd99e8",
                "name": "simorgh",
                "owner": "bgruening",
                "tool_shed": "toolshed.g2.bx.psu.edu"
            },
            "tool_state": "{\"bbflow_condi\": {\"bbflow\": \"yes\", \"__current_case__\": 1, \"num_samples\": \"8\", \"timesteps\": \"20\", \"batch_size\": null, \"advanced\": {\"tag\": \"bbflow-multimer-0.2\", \"gamma_trans\": null, \"gamma_rots\": null}}, \"cluster_condi\": {\"cluster\": \"no\", \"__current_case__\": 0}, \"non_commercial_use\": true, \"pdb\": {\"__class__\": \"ConnectedValue\"}, \"viz_condi\": {\"visualize\": \"yes\", \"__current_case__\": 1, \"viz_style\": \"sphere\"}, \"__page__\": 0, \"__rerun_remap_job_id__\": null}",
            "tool_uuid": null,
            "tool_version": "1.0.1+galaxy1",
            "type": "tool",
            "uuid": "1ca2a029-9bda-4047-bbc6-6cffeca3718e",
            "when": "$(inputs.when)",
            "workflow_outputs": [
                {
                    "label": "viz_out_apo",
                    "output_name": "viz_out",
                    "uuid": "98192b3a-6b1a-41fe-896c-545f481e7236"
                },
                {
                    "label": "pdb_out_apo_multi",
                    "output_name": "pdb_out",
                    "uuid": "d64fa573-c930-42f8-acf8-6a395e56e8f4"
                }
            ]
        },
        "16": {
            "annotation": "",
            "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/simorgh/simorgh/1.0.1+galaxy1",
            "errors": null,
            "id": 16,
            "input_connections": {
                "pdb": {
                    "id": 12,
                    "output_name": "outfile"
                },
                "when": {
                    "id": 7,
                    "output_name": "output"
                }
            },
            "inputs": [],
            "label": null,
            "name": "SIMORGH",
            "outputs": [
                {
                    "name": "pdb_out",
                    "type": "pdb"
                },
                {
                    "name": "viz_out",
                    "type": "html"
                }
            ],
            "position": {
                "left": 2380,
                "top": 160
            },
            "post_job_actions": {
                "RenameDatasetActionpdb_out": {
                    "action_arguments": {
                        "newname": "SIMORGH, Predicted Structure - apo-single"
                    },
                    "action_type": "RenameDatasetAction",
                    "output_name": "pdb_out"
                },
                "RenameDatasetActionviz_out": {
                    "action_arguments": {
                        "newname": "SIMORGH, visualization - apo-single"
                    },
                    "action_type": "RenameDatasetAction",
                    "output_name": "viz_out"
                }
            },
            "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/simorgh/simorgh/1.0.1+galaxy1",
            "tool_shed_repository": {
                "changeset_revision": "7cbaa6fd99e8",
                "name": "simorgh",
                "owner": "bgruening",
                "tool_shed": "toolshed.g2.bx.psu.edu"
            },
            "tool_state": "{\"bbflow_condi\": {\"bbflow\": \"no\", \"__current_case__\": 0}, \"cluster_condi\": {\"cluster\": \"no\", \"__current_case__\": 0}, \"non_commercial_use\": true, \"pdb\": {\"__class__\": \"ConnectedValue\"}, \"viz_condi\": {\"visualize\": \"yes\", \"__current_case__\": 1, \"viz_style\": \"sphere\"}, \"__page__\": 0, \"__rerun_remap_job_id__\": null}",
            "tool_uuid": null,
            "tool_version": "1.0.1+galaxy1",
            "type": "tool",
            "uuid": "dff1130e-3814-4b98-816d-4c442a2f9236",
            "when": "$(inputs.when)",
            "workflow_outputs": [
                {
                    "label": "pdb_out_apo_single",
                    "output_name": "pdb_out",
                    "uuid": "a2180ecf-683a-4d9b-9ff4-2350ea0e1769"
                },
                {
                    "label": "viz_out_apo_single",
                    "output_name": "viz_out",
                    "uuid": "0b0dff93-bb3c-4279-a648-5f905f8f705e"
                }
            ]
        },
        "17": {
            "annotation": "",
            "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/simorgh/simorgh/1.0.1+galaxy1",
            "errors": null,
            "id": 17,
            "input_connections": {
                "pdb": {
                    "id": 13,
                    "output_name": "outfile"
                },
                "when": {
                    "id": 7,
                    "output_name": "output"
                }
            },
            "inputs": [],
            "label": null,
            "name": "SIMORGH",
            "outputs": [
                {
                    "name": "pdb_out",
                    "type": "pdb"
                },
                {
                    "name": "bbflow_pdb",
                    "type": "pdb"
                },
                {
                    "name": "viz_out",
                    "type": "html"
                }
            ],
            "position": {
                "left": 2080,
                "top": 390
            },
            "post_job_actions": {
                "RenameDatasetActionbbflow_pdb": {
                    "action_arguments": {
                        "newname": "SIMORGH, BBflow - holo-multi"
                    },
                    "action_type": "RenameDatasetAction",
                    "output_name": "bbflow_pdb"
                },
                "RenameDatasetActionpdb_out": {
                    "action_arguments": {
                        "newname": "SIMORGH, Predicted Structure - holo-multi"
                    },
                    "action_type": "RenameDatasetAction",
                    "output_name": "pdb_out"
                },
                "RenameDatasetActionviz_out": {
                    "action_arguments": {
                        "newname": "SIMORGH, visualization - holo-multi"
                    },
                    "action_type": "RenameDatasetAction",
                    "output_name": "viz_out"
                }
            },
            "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/simorgh/simorgh/1.0.1+galaxy1",
            "tool_shed_repository": {
                "changeset_revision": "7cbaa6fd99e8",
                "name": "simorgh",
                "owner": "bgruening",
                "tool_shed": "toolshed.g2.bx.psu.edu"
            },
            "tool_state": "{\"bbflow_condi\": {\"bbflow\": \"yes\", \"__current_case__\": 1, \"num_samples\": \"8\", \"timesteps\": \"20\", \"batch_size\": null, \"advanced\": {\"tag\": \"bbflow-multimer-0.2\", \"gamma_trans\": null, \"gamma_rots\": null}}, \"cluster_condi\": {\"cluster\": \"no\", \"__current_case__\": 0}, \"non_commercial_use\": true, \"pdb\": {\"__class__\": \"ConnectedValue\"}, \"viz_condi\": {\"visualize\": \"yes\", \"__current_case__\": 1, \"viz_style\": \"sphere\"}, \"__page__\": 0, \"__rerun_remap_job_id__\": null}",
            "tool_uuid": null,
            "tool_version": "1.0.1+galaxy1",
            "type": "tool",
            "uuid": "ede9f4d2-9c9f-4581-85bc-3848958b83f9",
            "when": "$(inputs.when)",
            "workflow_outputs": [
                {
                    "label": "pdb_out_holo_multi",
                    "output_name": "pdb_out",
                    "uuid": "66dfb77e-d280-4830-84a6-43ffa177c39f"
                },
                {
                    "label": "viz_out_holo",
                    "output_name": "viz_out",
                    "uuid": "094ae5d1-7c52-4fe2-a8e3-9fcbd4bb4402"
                }
            ]
        },
        "18": {
            "annotation": "",
            "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/simorgh/simorgh/1.0.1+galaxy1",
            "errors": null,
            "id": 18,
            "input_connections": {
                "pdb": {
                    "id": 13,
                    "output_name": "outfile"
                },
                "when": {
                    "id": 7,
                    "output_name": "output"
                }
            },
            "inputs": [],
            "label": null,
            "name": "SIMORGH",
            "outputs": [
                {
                    "name": "pdb_out",
                    "type": "pdb"
                },
                {
                    "name": "viz_out",
                    "type": "html"
                }
            ],
            "position": {
                "left": 2380,
                "top": 390
            },
            "post_job_actions": {
                "RenameDatasetActionpdb_out": {
                    "action_arguments": {
                        "newname": "SIMORGH, Predicted Structure - holo-single"
                    },
                    "action_type": "RenameDatasetAction",
                    "output_name": "pdb_out"
                },
                "RenameDatasetActionviz_out": {
                    "action_arguments": {
                        "newname": "SIMORGH, visualization - holo-single"
                    },
                    "action_type": "RenameDatasetAction",
                    "output_name": "viz_out"
                }
            },
            "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/simorgh/simorgh/1.0.1+galaxy1",
            "tool_shed_repository": {
                "changeset_revision": "7cbaa6fd99e8",
                "name": "simorgh",
                "owner": "bgruening",
                "tool_shed": "toolshed.g2.bx.psu.edu"
            },
            "tool_state": "{\"bbflow_condi\": {\"bbflow\": \"no\", \"__current_case__\": 0}, \"cluster_condi\": {\"cluster\": \"no\", \"__current_case__\": 0}, \"non_commercial_use\": true, \"pdb\": {\"__class__\": \"ConnectedValue\"}, \"viz_condi\": {\"visualize\": \"yes\", \"__current_case__\": 1, \"viz_style\": \"sphere\"}, \"__page__\": 0, \"__rerun_remap_job_id__\": null}",
            "tool_uuid": null,
            "tool_version": "1.0.1+galaxy1",
            "type": "tool",
            "uuid": "f69a1b16-0e52-4ba9-bfe1-03378318bf06",
            "when": "$(inputs.when)",
            "workflow_outputs": [
                {
                    "label": "pdb_out_holo_single",
                    "output_name": "pdb_out",
                    "uuid": "8c8aa601-6ccf-474e-8949-94c2a9a4f05f"
                },
                {
                    "label": "viz_out_holo_single",
                    "output_name": "viz_out",
                    "uuid": "cb3aaa62-d5a9-428b-ae69-b2db76e4056c"
                }
            ]
        },
        "19": {
            "annotation": "",
            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/colabfold_alphafold/colabfold_alphafold/1.5.5+galaxy1",
            "errors": null,
            "id": 19,
            "input_connections": {
                "input": {
                    "id": 14,
                    "output_name": "output"
                }
            },
            "inputs": [],
            "label": null,
            "name": "Colabfold Alphafold",
            "outputs": [
                {
                    "name": "png_files",
                    "type": "input"
                },
                {
                    "name": "json_files",
                    "type": "input"
                },
                {
                    "name": "pdb",
                    "type": "input"
                },
                {
                    "name": "a3m",
                    "type": "input"
                }
            ],
            "position": {
                "left": 1020,
                "top": 560
            },
            "post_job_actions": {},
            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/colabfold_alphafold/colabfold_alphafold/1.5.5+galaxy1",
            "tool_shed_repository": {
                "changeset_revision": "9d65257c56de",
                "name": "colabfold_alphafold",
                "owner": "iuc",
                "tool_shed": "toolshed.g2.bx.psu.edu"
            },
            "tool_state": "{\"advanced\": {\"num_recycles\": \"5\", \"recycle_early_stop_tolerance\": null, \"num_ensemble\": \"1\", \"random_seed\": \"42\", \"num_seeds\": null, \"num_models\": \"1\", \"max_msa\": \"512:1024\", \"use_dropout\": false, \"amber\": {\"use_amber\": \"no\", \"__current_case__\": 0}}, \"input\": {\"__class__\": \"ConnectedValue\"}, \"output_options\": {\"save_all\": false, \"save_recycles\": false, \"save_single_representations\": false, \"save_pair_representations\": false}, \"__page__\": 0, \"__rerun_remap_job_id__\": null}",
            "tool_uuid": null,
            "tool_version": "1.5.5+galaxy1",
            "type": "tool",
            "uuid": "ec2beded-e2b4-4d8d-a6b9-25b3fdb55892",
            "when": null,
            "workflow_outputs": []
        },
        "20": {
            "annotation": "",
            "content_id": "__EXTRACT_DATASET__",
            "errors": null,
            "id": 20,
            "input_connections": {
                "input": {
                    "id": 19,
                    "output_name": "pdb"
                }
            },
            "inputs": [],
            "label": null,
            "name": "Extract dataset",
            "outputs": [
                {
                    "name": "output",
                    "type": "data"
                }
            ],
            "position": {
                "left": 1280,
                "top": 560
            },
            "post_job_actions": {
                "ChangeDatatypeActionoutput": {
                    "action_arguments": {
                        "newtype": "pdb"
                    },
                    "action_type": "ChangeDatatypeAction",
                    "output_name": "output"
                },
                "RenameDatasetActionoutput": {
                    "action_arguments": {
                        "newname": "FtsY Colabfold predicted"
                    },
                    "action_type": "RenameDatasetAction",
                    "output_name": "output"
                },
                "TagDatasetActionoutput": {
                    "action_arguments": {
                        "tags": "name:colabfold"
                    },
                    "action_type": "TagDatasetAction",
                    "output_name": "output"
                }
            },
            "tool_id": "__EXTRACT_DATASET__",
            "tool_state": "{\"input\": {\"__class__\": \"ConnectedValue\"}, \"which\": {\"which_dataset\": \"first\", \"__current_case__\": 0}, \"__page__\": 0, \"__rerun_remap_job_id__\": null}",
            "tool_uuid": null,
            "tool_version": "1.0.2",
            "type": "tool",
            "uuid": "e440fcbe-2a50-4864-a35f-e20a981a77b1",
            "when": null,
            "workflow_outputs": []
        },
        "21": {
            "annotation": "",
            "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/simorgh/simorgh/1.0.1+galaxy1",
            "errors": null,
            "id": 21,
            "input_connections": {
                "pdb": {
                    "id": 20,
                    "output_name": "output"
                },
                "when": {
                    "id": 7,
                    "output_name": "output"
                }
            },
            "inputs": [],
            "label": null,
            "name": "SIMORGH",
            "outputs": [
                {
                    "name": "pdb_out",
                    "type": "pdb"
                },
                {
                    "name": "bbflow_pdb",
                    "type": "pdb"
                },
                {
                    "name": "viz_out",
                    "type": "html"
                }
            ],
            "position": {
                "left": 2080,
                "top": 620
            },
            "post_job_actions": {
                "RenameDatasetActionbbflow_pdb": {
                    "action_arguments": {
                        "newname": "SIMORGH, BBflow - colabfold-multi"
                    },
                    "action_type": "RenameDatasetAction",
                    "output_name": "bbflow_pdb"
                },
                "RenameDatasetActionpdb_out": {
                    "action_arguments": {
                        "newname": "SIMORGH, Predicted Structure - colabfold-multi"
                    },
                    "action_type": "RenameDatasetAction",
                    "output_name": "pdb_out"
                },
                "RenameDatasetActionviz_out": {
                    "action_arguments": {
                        "newname": "SIMORGH, visualization - colabfold-multi"
                    },
                    "action_type": "RenameDatasetAction",
                    "output_name": "viz_out"
                }
            },
            "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/simorgh/simorgh/1.0.1+galaxy1",
            "tool_shed_repository": {
                "changeset_revision": "7cbaa6fd99e8",
                "name": "simorgh",
                "owner": "bgruening",
                "tool_shed": "toolshed.g2.bx.psu.edu"
            },
            "tool_state": "{\"bbflow_condi\": {\"bbflow\": \"yes\", \"__current_case__\": 1, \"num_samples\": \"8\", \"timesteps\": \"20\", \"batch_size\": null, \"advanced\": {\"tag\": \"bbflow-multimer-0.2\", \"gamma_trans\": null, \"gamma_rots\": null}}, \"cluster_condi\": {\"cluster\": \"no\", \"__current_case__\": 0}, \"non_commercial_use\": true, \"pdb\": {\"__class__\": \"ConnectedValue\"}, \"viz_condi\": {\"visualize\": \"yes\", \"__current_case__\": 1, \"viz_style\": \"sphere\"}, \"__page__\": 0, \"__rerun_remap_job_id__\": null}",
            "tool_uuid": null,
            "tool_version": "1.0.1+galaxy1",
            "type": "tool",
            "uuid": "621629f3-d4ae-4f2a-9e92-acd221b7ead4",
            "when": "$(inputs.when)",
            "workflow_outputs": [
                {
                    "label": "pdb_out_colabfold_multi",
                    "output_name": "pdb_out",
                    "uuid": "2e4f02ce-e6f2-4e35-aedb-eeb4c95197bc"
                },
                {
                    "label": "viz_out_colab",
                    "output_name": "viz_out",
                    "uuid": "03e6b954-dddc-4fec-b739-7d76f3553b86"
                }
            ]
        },
        "22": {
            "annotation": "",
            "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/simorgh/simorgh/1.0.1+galaxy1",
            "errors": null,
            "id": 22,
            "input_connections": {
                "pdb": {
                    "id": 20,
                    "output_name": "output"
                },
                "when": {
                    "id": 7,
                    "output_name": "output"
                }
            },
            "inputs": [],
            "label": null,
            "name": "SIMORGH",
            "outputs": [
                {
                    "name": "pdb_out",
                    "type": "pdb"
                },
                {
                    "name": "viz_out",
                    "type": "html"
                }
            ],
            "position": {
                "left": 2380,
                "top": 620
            },
            "post_job_actions": {
                "RenameDatasetActionpdb_out": {
                    "action_arguments": {
                        "newname": "SIMORGH, Predicted Structure - colabfold-single"
                    },
                    "action_type": "RenameDatasetAction",
                    "output_name": "pdb_out"
                },
                "RenameDatasetActionviz_out": {
                    "action_arguments": {
                        "newname": "SIMORGH, visualization - colabfold-single"
                    },
                    "action_type": "RenameDatasetAction",
                    "output_name": "viz_out"
                }
            },
            "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/simorgh/simorgh/1.0.1+galaxy1",
            "tool_shed_repository": {
                "changeset_revision": "7cbaa6fd99e8",
                "name": "simorgh",
                "owner": "bgruening",
                "tool_shed": "toolshed.g2.bx.psu.edu"
            },
            "tool_state": "{\"bbflow_condi\": {\"bbflow\": \"no\", \"__current_case__\": 0}, \"cluster_condi\": {\"cluster\": \"no\", \"__current_case__\": 0}, \"non_commercial_use\": true, \"pdb\": {\"__class__\": \"ConnectedValue\"}, \"viz_condi\": {\"visualize\": \"yes\", \"__current_case__\": 1, \"viz_style\": \"sphere\"}, \"__page__\": 0, \"__rerun_remap_job_id__\": null}",
            "tool_uuid": null,
            "tool_version": "1.0.1+galaxy1",
            "type": "tool",
            "uuid": "d73aa697-02f0-42d7-91dc-e5a4770e3d89",
            "when": "$(inputs.when)",
            "workflow_outputs": [
                {
                    "label": "pdb_out_colabfold_single",
                    "output_name": "pdb_out",
                    "uuid": "2d59231a-ff61-4a63-9277-215064291bbc"
                },
                {
                    "label": "viz_out_colabfold_single",
                    "output_name": "viz_out",
                    "uuid": "37c50dfb-faa0-46f7-91da-faff9e12165d"
                }
            ]
        }
    },
    "tags": [
        "gtn"
    ],
    "uuid": "20fb7b82-3b74-45fb-8c36-212298bbb270",
    "version": 17
}