Workflows

These workflows are associated with 16S Microbial Analysis with mothur (short)

To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.

Workflow Updated Import Has Tests Tested License Creators
workflow1_quality_control.ga May 18, 2023 Launch in Tutorial Mode What is tutorial mode?
Import to UseGalaxy.eu
Import to UseGalaxy.org
Import to UseGalaxy.org.au
Import to another server (≥23.0+ only!)
MIT Saskia Hiltemann
workflow2_data_cleaning.ga May 18, 2023 Launch in Tutorial Mode What is tutorial mode?
Import to UseGalaxy.eu
Import to UseGalaxy.org
Import to UseGalaxy.org.au
Import to another server (≥23.0+ only!)
MIT Saskia Hiltemann
workflow3_classification.ga May 18, 2023 Launch in Tutorial Mode What is tutorial mode?
Import to UseGalaxy.eu
Import to UseGalaxy.org
Import to UseGalaxy.org.au
Import to another server (≥23.0+ only!)
MIT Saskia Hiltemann
workflow4_mock_otu_clustering.ga May 18, 2023 Launch in Tutorial Mode What is tutorial mode?
Import to UseGalaxy.eu
Import to UseGalaxy.org
Import to UseGalaxy.org.au
Import to another server (≥23.0+ only!)
MIT Saskia Hiltemann
workflow5_otu_clustering.ga May 18, 2023 Launch in Tutorial Mode What is tutorial mode?
Import to UseGalaxy.eu
Import to UseGalaxy.org
Import to UseGalaxy.org.au
Import to another server (≥23.0+ only!)
MIT Saskia Hiltemann
workflow6_alpha_diversity.ga May 18, 2023 Launch in Tutorial Mode What is tutorial mode?
Import to UseGalaxy.eu
Import to UseGalaxy.org
Import to UseGalaxy.org.au
Import to another server (≥23.0+ only!)
MIT Saskia Hiltemann
workflow7_beta_diversity.ga May 18, 2023 Launch in Tutorial Mode What is tutorial mode?
Import to UseGalaxy.eu
Import to UseGalaxy.org
Import to UseGalaxy.org.au
Import to another server (≥23.0+ only!)
MIT Saskia Hiltemann

Importing into Galaxy

Below are the instructions for importing these workflows directly into your Galaxy server of choice to start using them!
Hands-on: Importing a workflow
  • Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
  • Click on galaxy-upload Import at the top-right of the screen
  • Provide your workflow
    • Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”
    • Option 2: Upload the workflow file in the box labelled “Archived Workflow File”
  • Click the Import workflow button