Can we use the ASaiM-MT workflow on multiple input files at the same time?
Subina MehtaCurrently, that is one of its limitations. However, Galaxy offers a workflow within workflow feature which can help process multiple files at the same time and this output can be combined into one using the MT2MQ tool.
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{% snippet topics/metagenomics/tutorials/metatranscriptomics/faqs/multiple_inputs.md %}