Workflows
These workflows are associated with Metatranscriptomics analysis using microbiome RNA-seq data (short)
To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.
| Workflow | Updated | Import | Has Tests | Tested | License | Creators |
|---|---|---|---|---|---|---|
| workflow1_preprocessing.ga | May 16, 2023 |
Launch in Tutorial Mode
What is tutorial mode?
|
✅ | ❌ | MIT | Bérénice Batut Pratik Jagtap Subina Mehta Ray Sajulga Emma Leith Praveen Kumar Saskia Hiltemann Paul Zierep |
| workflow2_community_profile.ga | May 16, 2023 |
Launch in Tutorial Mode
What is tutorial mode?
|
✅ | ❌ | MIT | Bérénice Batut Pratik Jagtap Subina Mehta Ray Sajulga Emma Leith Praveen Kumar Saskia Hiltemann Paul Zierep |
| workflow3_functional_information.ga | May 16, 2023 |
Launch in Tutorial Mode
What is tutorial mode?
|
✅ | ❌ | MIT | Bérénice Batut Pratik Jagtap Subina Mehta Ray Sajulga Emma Leith Praveen Kumar Saskia Hiltemann Paul Zierep |
| workflow3_functional_information_quick.ga | May 16, 2023 |
Launch in Tutorial Mode
What is tutorial mode?
|
✅ | ❌ | MIT | Bérénice Batut Pratik Jagtap Subina Mehta Ray Sajulga Emma Leith Praveen Kumar Saskia Hiltemann Paul Zierep |
Importing into Galaxy
Below are the instructions for importing these workflows directly into your Galaxy server of choice to start using them!Hands-on: Importing a workflow
- Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
- Click on galaxy-upload Import at the top-right of the screen
- Provide your workflow
- Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”
- Option 2: Upload the workflow file in the box labelled “Archived Workflow File”
- Click the Import workflow button