Frequently Asked Questions

Can't find one of the tools for this tutorial?

Tip: If a Tool is Missing

If you can’t find a tool you need for a tutorial on Galaxy, please:

  1. Check that you are using a compatible Galaxy server
    • Navigate to the overview box at the top of the tutorial
    • Find the “Supporting Materials” section
    • Check “Available on these Galaxies”
    • If your server is not listed here, the tutorial is not supported on your Galaxy server
    • You can create an account on one of the supporting Galaxies screenshot of overview box with available Galaxies section
  2. Use the GTN-in-Galaxy feature
    • Open your Galaxy server
    • Click on the icon on the top menu, this will open the GTN inside Galaxy.
    • Navigate to your tutorial
    • Tool names in tutorials will be blue buttons that open the correct tool for you
    • Note: this does not work for all tutorials (yet) gif showing how GTN-in-Galaxy works
  3. Still not finding the tool?

What should I do special if on usegalaxy.be?

Tip: What should I do special if on usegalaxy.be?

Note for anyone trying to follow the tutorial on usegalaxy.be:

In step 3 of the hands-on section of setting up the sars-cov-2 analysis bot, when suggested to run

planemo run vcf2lineage.ga vcf2lineage-job.yml --profile planemo-tutorial --history_name "vcf2lineage test"

please use directly the workflow ID 814dd8d1c056bc54 instead of vcf2lineage.ga. This ID points to a public workflow that’s using the version of the pangolin tool installed on usegalaxy.be`.



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