Which search algorithms are recommended for searching the metaproteomics data?
SearchGUI supports search using nine search algorithms (X! Tandem. MS-GF+. OMSSA, Comet, Tide, MyriMatch, MS_Amanda, DirecTag and Novor). For this tutorial, we have used the first two search algorithms in the list. In our hands, the first four search algorithms have given us the most optimal results.