Bérénice Batut
Favourite Topics
Favourite Formats
Contributions
The following list includes only slides and tutorials where the individual has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.)
Tutorials
- Variant Analysis / Exome sequencing data analysis for diagnosing a genetic disease
- Variant Analysis / Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data
- Metagenomics / Analyses of metagenomics data - The global picture
- Metagenomics / 16S Microbial Analysis with mothur (extended)
- Metagenomics / 16S Microbial Analysis with mothur (short)
- Metagenomics / Metatranscriptomics analysis using microbiome RNA-seq data
- Metagenomics / Metatranscriptomics analysis using microbiome RNA-seq data (short)
- Genome Annotation / Essential genes detection with Transposon insertion sequencing
- Epigenetics / Identification of the binding sites of the Estrogen receptor
- Epigenetics / Formation of the Super-Structures on the Inactive X
- Contributing to the Galaxy Training Material / Including a new topic
- Contributing to the Galaxy Training Material / Generating PDF artefacts of the website
- Contributing to the Galaxy Training Material / Creating content in Markdown
- Contributing to the Galaxy Training Material / Tools, Data, and Workflows for tutorials
- Contributing to the Galaxy Training Material / Running the GTN website locally
- Contributing to the Galaxy Training Material / Contributing with GitHub via command-line
- Contributing to the Galaxy Training Material / Creating Interactive Galaxy Tours
- Contributing to the Galaxy Training Material / Creating a new tutorial
- Contributing to the Galaxy Training Material / Contributing with GitHub via its interface
- Statistics and machine learning / Machine learning: classification and regression
- Teaching and Hosting Galaxy training / Running a workshop as instructor
- Teaching and Hosting Galaxy training / Organizing a workshop
- Teaching and Hosting Galaxy training / Set up a Galaxy for Training
- Sequence analysis / Quality Control
- Sequence analysis / Mapping
- Introduction to Galaxy Analyses / From peaks to genes
- Using Galaxy and Managing your Data / RStudio in Galaxy
- Transcriptomics / Pre-processing of Single-Cell RNA Data
- Transcriptomics / CLIP-Seq data analysis from pre-processing to motif detection
- Transcriptomics / Reference-based RNA-Seq data analysis
- Transcriptomics / RNA Seq Counts to Viz in R
- Transcriptomics / Clustering 3K PBMCs with Scanpy
- Development in Galaxy / Data source integration
- Foundations of Data Science / R basics in Galaxy
- Foundations of Data Science / Advanced R in Galaxy
- Ecology / Species distribution modeling
- Ecology / Regional GAM
Slides
- Epigenetics / Introduction to ChIP-Seq data analysis
- Variant Analysis / Introduction to Variant analysis
- Metagenomics / Introduction to metagenomics
- Contributing to the Galaxy Training Material / Overview of the Galaxy Training Material
- Introduction to Galaxy Analyses / Introduction to Galaxy
- Transcriptomics / Introduction to Transcriptomics
- Development in Galaxy / Galaxy from a developer point of view
- Epigenetics / ChIP-seq data analysis
- Contributing to the Galaxy Training Material / Contributing with GitHub via command-line
- Contributing to the Galaxy Training Material / Creating Slides
- Sequence analysis / Quality Control
- Galaxy Server administration / Docker and Galaxy
- Development in Galaxy / Galaxy Interactive Tours
- Development in Galaxy / Tool Shed: sharing Galaxy tools
- Development in Galaxy / Tool development and integration into Galaxy