Bérénice Batut
Contributions
The following list includes only slides and tutorials where the individual has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.)
Tutorials
- Contributing to the Galaxy Training Material / Running the GTN website locally
- Contributing to the Galaxy Training Material / Including a new topic
- Contributing to the Galaxy Training Material / Creating Interactive Galaxy Tours
- Contributing to the Galaxy Training Material / Creating content in Markdown
- Contributing to the Galaxy Training Material / Creating a new tutorial
- Contributing to the Galaxy Training Material / Tools, Data, and Workflows for tutorials
- Contributing to the Galaxy Training Material / Generating PDF artefacts of the website
- Contributing to the Galaxy Training Material / Contributing with GitHub via its interface
- Contributing to the Galaxy Training Material / Contributing with GitHub via command-line
- Genome Annotation / Essential genes detection with Transposon insertion sequencing
- Teaching and Hosting Galaxy training / Organizing a workshop
- Teaching and Hosting Galaxy training / Running a workshop as instructor
- Teaching and Hosting Galaxy training / Set up a Galaxy for Training
- Metagenomics / 16S Microbial Analysis with mothur (extended)
- Metagenomics / Metatranscriptomics analysis using microbiome RNA-seq data
- Metagenomics / Metatranscriptomics analysis using microbiome RNA-seq data (short)
- Metagenomics / 16S Microbial Analysis with mothur (short)
- Metagenomics / Analyses of metagenomics data - The global picture
- Sequence analysis / Mapping
- Sequence analysis / Quality Control
- Transcriptomics / Pre-processing of Single-Cell RNA Data
- Transcriptomics / Reference-based RNA-Seq data analysis
- Transcriptomics / CLIP-Seq data analysis from pre-processing to motif detection
- Transcriptomics / Clustering 3K PBMCs with Scanpy
- Transcriptomics / RNA Seq Counts to Viz in R
- Variant Analysis / Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data
- Variant Analysis / Exome sequencing data analysis for diagnosing a genetic disease
- Development in Galaxy / Data source integration
- Statistics and machine learning / Machine learning: classification and regression
- Epigenetics / Identification of the binding sites of the Estrogen receptor
- Epigenetics / Formation of the Super-Structures on the Inactive X
- Using Galaxy and Managing your Data / RStudio in Galaxy
- Introduction to Galaxy Analyses / Advanced R in Galaxy
- Introduction to Galaxy Analyses / R basics in Galaxy
- Introduction to Galaxy Analyses / From peaks to genes
- Ecology / Species distribution modeling
- Ecology / Regional GAM
Slides
- Epigenetics / Introduction to ChIP-Seq data analysis
- Contributing to the Galaxy Training Material / Overview of the Galaxy Training Material
- Metagenomics / Introduction to metagenomics
- Transcriptomics / Introduction to Transcriptomics
- Variant Analysis / Introduction to Variant analysis
- Development in Galaxy / Galaxy from a developer point of view
- Introduction to Galaxy Analyses / Introduction to Galaxy
- Contributing to the Galaxy Training Material / Creating Slides
- Contributing to the Galaxy Training Material / Contributing with GitHub via command-line
- Sequence analysis / Quality Control
- Development in Galaxy / Tool Shed: sharing Galaxy tools
- Development in Galaxy / Tool development and integration into Galaxy
- Development in Galaxy / Galaxy Interactive Tours
- Epigenetics / ChIP-seq data analysis
- Galaxy Server administration / Docker and Galaxy