Using Galaxy and Managing your Data

A collection of microtutorials explaining various features of the Galaxy user interface and manipulating data within Galaxy.

Material

Uploading Data

These tutorials will help you get data into Galaxy, before you analyse it.

Lesson	Slides	Hands-on
Getting data into Galaxy	plain text Toggle Dropdown English Français 日本語 Español Português العربية And more! Plain text slides
Rule Based Uploader Intermediate		tutorial Toggle Dropdown Automatic translations Français 日本語 Español Português العربية And more!
Rule Based Uploader: Advanced Advanced		tutorial Toggle Dropdown Automatic translations Français 日本語 Español Português العربية And more!
SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis	plain text Toggle Dropdown English Français 日本語 Español Português العربية And more! Plain text slides	tutorial Toggle Dropdown Automatic translations Français 日本語 Español Português العربية And more!

Galaxy Features

Learn how to use Galaxy efficiently

Lesson	Slides	Hands-on
Extracting Workflows from Histories		tutorial Toggle Dropdown Automatic translations Français 日本語 Español Português العربية And more!
Searching Your History Introductory		tutorial Toggle Dropdown Automatic translations Français 日本語 Español Português العربية And more!
Understanding Galaxy history system		tutorial Toggle Dropdown Automatic translations Français 日本語 Español Português العربية And more!

Making Data Manageable

Now that you have data in Galaxy, let's make it easier to work with through collections and structured data.

Lesson	Slides	Hands-on
Group tags for complex experimental designs		tutorial Toggle Dropdown Automatic translations Français 日本語 Español Português العربية And more!
Multisample Analysis Advanced		tutorial Toggle Dropdown Automatic translations Français 日本語 Español Português العربية And more!
Name tags for following complex histories		tutorial Toggle Dropdown Automatic translations Français 日本語 Español Português العربية And more!
Using dataset collections Intermediate		tutorial Toggle Dropdown Automatic translations Français 日本語 Español Português العربية And more!

Analysing Data

Some advanced topics in data analyis.

Lesson	Slides	Hands-on
Automating Galaxy workflows using the command line		tutorial Toggle Dropdown Automatic translations Français 日本語 Español Português العربية And more!
Creating, Editing and Importing Galaxy Workflows Intermediate		tutorial Toggle Dropdown Automatic translations Français 日本語 Español Português العربية And more!
InterMine integration with Galaxy		tutorial Toggle Dropdown Automatic translations Français 日本語 Español Português العربية And more!
JupyterLab in Galaxy		tutorial Toggle Dropdown Automatic translations Français 日本語 Español Português العربية And more!
RStudio in Galaxy		tutorial Toggle Dropdown Automatic translations Français 日本語 Español Português العربية And more!
Use Jupyter notebooks in Galaxy		tutorial Toggle Dropdown Automatic translations Français 日本語 Español Português العربية And more!
Using Workflow Parameters Intermediate		tutorial Toggle Dropdown Automatic translations Français 日本語 Español Português العربية And more!

Download and free up space

Once you are done with your analyses in Galaxy, it's time to download your data and free up space.

Lesson	Slides	Hands-on
Downloading and Deleting Data in Galaxy Introductory		tutorial Toggle Dropdown Automatic translations Français 日本語 Español Português العربية And more!

Other

Assorted other tutorials

Lesson	Slides	Hands-on
Submitting raw sequencing reads to ENA Intermediate	plain text Toggle Dropdown English Français 日本語 Español Português العربية And more! Plain text slides	tutorial Toggle Dropdown Automatic translations Français 日本語 Español Português العربية And more!

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.