Galaxy Server administration

Resources related to configuration and maintenance of Galaxy servers

Material

Core

These are the core, foundational topics for the majority of administration in Galaxy.

Lesson Slides Hands-on
Galaxy from an administrator's point of view
slides
Ansible
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Galaxy Installation with Ansible
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Further Learning

These topics will let you further expand your knowledge. They all build upon what you learned in the core topics, and many expect that you have a setup identical to the one started in the core trainings.

Lesson Slides Hands-on
Connecting Galaxy to a compute cluster
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Data Libraries
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Distributed Object Storage
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Enable upload via FTP
tutorial
External Authentication
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Galaxy Monitoring with gxadmin
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Galaxy Monitoring with Reports
tutorial
Galaxy Monitoring with Telegraf and Grafana
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Galaxy Tool Management with Ephemeris
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Mapping Jobs to Destinations
tutorial
Reference Data with CVMFS
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Running Jobs on Remote Resources with Pulsar
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Training Infrastructure as a Service (TIaaS)
tutorial
Upgrading Galaxy
tutorial
Use Singularity containers for running Galaxy jobs
tutorial

Other


Assorted other tutorials

Lesson Slides Hands-on
Advanced customisation of a Galaxy instance
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Automation with Jenkins
tutorial
Controlling Galaxy with systemd or Supervisor
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Deploying a compute cluster in OpenStack via Terraform
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Docker and Galaxy
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Empathy
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Galactic Database
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Galaxy Database schema
tutorial
Galaxy Installation on Kubernetes
Intermediate
tutorial
Galaxy Interactive Tools
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Galaxy Monitoring
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Galaxy on the Cloud
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Galaxy Troubleshooting
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Gearing towards production
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Managing Galaxy on Kubernetes
Intermediate
tutorial
Reference Data with CVMFS without Ansible
tutorial
Reference Genomes in Galaxy
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Server Maintenance and Backups
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User, Group and Quota managment
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uWSGI
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Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

Maintainers

This material is maintained by:

AvatarBjörn Grüning AvatarMartin Čech AvatarHelena Rasche AvatarSimon Gladman

For any question related to this topic and the content, you can contact them or visit our Gitter channel.

Contributors

This material was contributed to by:

AvatarValentin Marcon AvatarNate Coraor AvatarBjörn Grüning AvatarHelena Rasche AvatarMartin Čech AvatarSaskia Hiltemann AvatarGianmauro Cuccuru AvatarBérénice Batut AvatarLucille Delisle AvatarNicola Soranzo AvatarHans-Rudolf Hotz AvatarPablo Moreno AvatarEnis Afgan AvatarNuwan Goonasekera AvatarAlex Mahmoud AvatarSergey Golitsynskiy AvatarSimon Gladman AvatarAnthony Bretaudeau AvatarDaniel Blankenberg AvatarAbdulrahman Azab AvatarMarius van den Beek AvatarTorfinn Nome AvatarMatthias Bernt