Bérénice Batut
Contributions
The following list includes only slides and tutorials where the individual has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.)
Tutorials
- Transcriptomics / Reference-based RNA-Seq data analysis
- Transcriptomics / Clustering 3K PBMCs with Scanpy
- Transcriptomics / CLIP-Seq data analysis from pre-processing to motif detection
- Transcriptomics / RNA Seq Counts to Viz in R
- Transcriptomics / Pre-processing of Single-Cell RNA Data
- Metagenomics / Analyses of metagenomics data - The global picture
- Metagenomics / Metatranscriptomics analysis using microbiome RNA-seq data
- Metagenomics / 16S Microbial Analysis with mothur (extended)
- Metagenomics / Metatranscriptomics analysis using microbiome RNA-seq data (short)
- Metagenomics / 16S Microbial Analysis with mothur (short)
- Sequence analysis / Mapping
- Sequence analysis / Quality Control
- Statistics and machine learning / Machine learning: classification and regression
- Teaching and Hosting Galaxy training / Set up a Galaxy for Training
- Teaching and Hosting Galaxy training / Organizing a workshop
- Teaching and Hosting Galaxy training / Running a workshop as instructor
- Ecology / Species distribution modeling
- Ecology / Regional GAM
- Introduction to Galaxy Analyses / From peaks to genes
- Introduction to Galaxy Analyses / R basics in Galaxy
- Introduction to Galaxy Analyses / Advanced R in Galaxy
- Development in Galaxy / Data source integration
- Genome Annotation / Essential genes detection with Transposon insertion sequencing
- Using Galaxy and Managing your Data / RStudio in Galaxy
- Variant Analysis / Exome sequencing data analysis for diagnosing a genetic disease
- Variant Analysis / Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data
- Epigenetics / Formation of the Super-Structures on the Inactive X
- Epigenetics / Identification of the binding sites of the Estrogen receptor
- Contributing to the Galaxy Training Material / Tools, Data, and Workflows for tutorials
- Contributing to the Galaxy Training Material / Contributing with GitHub via its interface
- Contributing to the Galaxy Training Material / Creating Interactive Galaxy Tours
- Contributing to the Galaxy Training Material / Creating a new tutorial
- Contributing to the Galaxy Training Material / Creating content in Markdown
- Contributing to the Galaxy Training Material / Contributing with GitHub via command-line
- Contributing to the Galaxy Training Material / Including a new topic
- Contributing to the Galaxy Training Material / Generating PDF artefacts of the website
- Contributing to the Galaxy Training Material / Running the GTN website locally
Slides
- Epigenetics / Introduction to ChIP-Seq data analysis
- Transcriptomics / Introduction to Transcriptomics
- Metagenomics / Introduction to metagenomics
- Introduction to Galaxy Analyses / Introduction to Galaxy
- Development in Galaxy / Galaxy from a developer point of view
- Variant Analysis / Introduction to Variant analysis
- Contributing to the Galaxy Training Material / Overview of the Galaxy Training Material
- Galaxy Server administration / Docker and Galaxy
- Sequence analysis / Quality Control
- Development in Galaxy / Tool development and integration into Galaxy
- Development in Galaxy / Tool Shed: sharing Galaxy tools
- Development in Galaxy / Galaxy Interactive Tours
- Epigenetics / ChIP-seq data analysis
- Contributing to the Galaxy Training Material / Creating Slides
- Contributing to the Galaxy Training Material / Contributing with GitHub via command-line