Bérénice Batut
Contributions
The following list includes only slides and tutorials where the individual has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.)
Tutorials
- Development in Galaxy / Data source integration
- Epigenetics / Formation of the Super-Structures on the Inactive X
- Epigenetics / Identification of the binding sites of the Estrogen receptor
- Transcriptomics / CLIP-Seq data analysis from pre-processing to motif detection
- Transcriptomics / RNA Seq Counts to Viz in R
- Transcriptomics / Clustering 3K PBMCs with Scanpy
- Transcriptomics / Reference-based RNA-Seq data analysis
- Transcriptomics / Pre-processing of Single-Cell RNA Data
- Using Galaxy and Managing your Data / RStudio in Galaxy
- Contributing to the Galaxy Training Material / Including a new topic
- Contributing to the Galaxy Training Material / Creating Interactive Galaxy Tours
- Contributing to the Galaxy Training Material / Creating content in Markdown
- Contributing to the Galaxy Training Material / Tools, Data, and Workflows for tutorials
- Contributing to the Galaxy Training Material / Creating a new tutorial
- Contributing to the Galaxy Training Material / Running the GTN website locally
- Contributing to the Galaxy Training Material / Contributing with GitHub via command-line
- Contributing to the Galaxy Training Material / Generating PDF artefacts of the website
- Contributing to the Galaxy Training Material / Contributing with GitHub via its interface
- Teaching and Hosting Galaxy training / Organizing a workshop
- Teaching and Hosting Galaxy training / Set up a Galaxy for Training
- Teaching and Hosting Galaxy training / Running a workshop as instructor
- Statistics and machine learning / Machine learning: classification and regression
- Ecology / Regional GAM
- Ecology / Species distribution modeling
- Metagenomics / Analyses of metagenomics data - The global picture
- Metagenomics / 16S Microbial Analysis with mothur (extended)
- Metagenomics / 16S Microbial Analysis with mothur (short)
- Metagenomics / Metatranscriptomics analysis using microbiome RNA-seq data (short)
- Metagenomics / Metatranscriptomics analysis using microbiome RNA-seq data
- Sequence analysis / Quality Control
- Sequence analysis / Mapping
- Variant Analysis / Exome sequencing data analysis for diagnosing a genetic disease
- Variant Analysis / Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data
- Genome Annotation / Essential genes detection with Transposon insertion sequencing
- Introduction to Galaxy Analyses / Advanced R in Galaxy
- Introduction to Galaxy Analyses / R basics in Galaxy
- Introduction to Galaxy Analyses / From peaks to genes
Slides
- Epigenetics / Introduction to ChIP-Seq data analysis
- Development in Galaxy / Galaxy from a developer point of view
- Transcriptomics / Introduction to Transcriptomics
- Contributing to the Galaxy Training Material / Overview of the Galaxy Training Material
- Metagenomics / Introduction to metagenomics
- Variant Analysis / Introduction to Variant analysis
- Introduction to Galaxy Analyses / Introduction to Galaxy
- Development in Galaxy / Tool Shed: sharing Galaxy tools
- Development in Galaxy / Galaxy Interactive Tours
- Development in Galaxy / Tool development and integration into Galaxy
- Epigenetics / ChIP-seq data analysis
- Galaxy Server administration / Docker and Galaxy
- Contributing to the Galaxy Training Material / Creating Slides
- Contributing to the Galaxy Training Material / Contributing with GitHub via command-line
- Sequence analysis / Quality Control