Bérénice Batut
Contributions
The following list includes only slides and tutorials where the individual has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.)
Tutorials
- Metagenomics / Metatranscriptomics analysis using microbiome RNA-seq data
- Metagenomics / 16S Microbial Analysis with mothur (short)
- Metagenomics / 16S Microbial Analysis with mothur (extended)
- Metagenomics / Analyses of metagenomics data - The global picture
- Metagenomics / Metatranscriptomics analysis using microbiome RNA-seq data (short)
- Introduction to Galaxy Analyses / R basics in Galaxy
- Introduction to Galaxy Analyses / From peaks to genes
- Introduction to Galaxy Analyses / Advanced R in Galaxy
- Using Galaxy and Managing your Data / RStudio in Galaxy
- Development in Galaxy / Data source integration
- Variant Analysis / Exome sequencing data analysis for diagnosing a genetic disease
- Epigenetics / Identification of the binding sites of the Estrogen receptor
- Epigenetics / Formation of the Super-Structures on the Inactive X
- Transcriptomics / Reference-based RNA-Seq data analysis
- Transcriptomics / RNA Seq Counts to Viz in R
- Transcriptomics / CLIP-Seq data analysis from pre-processing to motif detection
- Transcriptomics / Pre-processing of Single-Cell RNA Data
- Transcriptomics / Clustering 3K PBMCs with Scanpy
- Ecology / Regional GAM
- Ecology / Species distribution modeling
- Teaching and Hosting Galaxy training / Organizing a workshop
- Teaching and Hosting Galaxy training / Running a workshop as instructor
- Teaching and Hosting Galaxy training / Set up a Galaxy for Training
- Sequence analysis / Quality Control
- Sequence analysis / Mapping
- Contributing to the Galaxy Training Material / Running the Galaxy Training material website locally
- Contributing to the Galaxy Training Material / Creating content in Markdown
- Contributing to the Galaxy Training Material / Contributing with GitHub via command-line
- Contributing to the Galaxy Training Material / Including a new topic
- Contributing to the Galaxy Training Material / Generating PDF artefacts of the website
- Contributing to the Galaxy Training Material / Creating Interactive Galaxy Tours
- Contributing to the Galaxy Training Material / Contributing with GitHub via its interface
- Contributing to the Galaxy Training Material / Tools, Data, and Workflows for tutorials
- Contributing to the Galaxy Training Material / Creating a new tutorial
- Genome Annotation / Essential genes detection with Transposon insertion sequencing
- Statistics and machine learning / Machine learning: classification and regression
Slides
- Epigenetics / Introduction to ChIP-Seq data analysis
- Metagenomics / Introduction to metagenomics
- Introduction to Galaxy Analyses / Introduction to Galaxy
- Development in Galaxy / Galaxy from a developer point of view
- Variant Analysis / Introduction to Variant analysis
- Transcriptomics / Introduction to Transcriptomics
- Contributing to the Galaxy Training Material / Overview of the Galaxy Training Material
- Galaxy Server administration / Docker and Galaxy
- Development in Galaxy / Tool Shed: sharing Galaxy tools
- Development in Galaxy / Tool development and integration into Galaxy
- Development in Galaxy / Galaxy Interactive Tours
- Epigenetics / ChIP-seq data analysis
- Sequence analysis / Quality Control
- Contributing to the Galaxy Training Material / Contributing with GitHub via command-line
- Contributing to the Galaxy Training Material / Creating Slides