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--- # Introduction to ChIP-Seq data analysis --- ## Requirements Before diving into this slide deck, we recommend you to have a look at: - [Introduction to Galaxy Analyses](/archive/2020-12-01/topics/introduction) - [Sequence analysis](/archive/2020-12-01/topics/sequence-analysis) - Quality Control: [
slides](/archive/2020-12-01/topics/sequence-analysis/tutorials/quality-control/slides.html) - [
hands-on](/archive/2020-12-01/topics/sequence-analysis/tutorials/quality-control/tutorial.html) - Mapping: [
slides](/archive/2020-12-01/topics/sequence-analysis/tutorials/mapping/slides.html) - [
hands-on](/archive/2020-12-01/topics/sequence-analysis/tutorials/mapping/tutorial.html) .footnote[Tip: press `P` to view the presenter notes] ??? Presenter notes contain extra information which might be useful if you intend to use these slides for teaching. Press `P` again to switch presenter notes off Press `C` to create a new window where the same presentation will be displayed. This window is linked to the main window. Changing slides on one will cause the slide to change on the other. Useful when presenting. --- # What is ChIP sequencing? --- ### Where my data comes from? !(../images/ecker_2012.jpg) <small> [*Ecker et al, Nature, 2012*](https://www.ncbi.nlm.nih.gov/pubmed/22955614) </small> --- ### Chromatin immuno-precipitation !(../images/szalkowski_schmid_2011.jpg) [*Szalkowski & Schmid, Brief Bioinform, 2011*](https://bib.oxfordjournals.org/content/12/6/626.long) --- ## How to analyze ChIP-seq data? --- ### Common procedures for ChIP-seq data analysis !(../images/kidder_2011.jpg) [*Kidder et al, Nature Immunology, 2011*](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3541830/) --- ## Related tutorials --- ## Thank you! This material is the result of a collaborative work. Thanks to the [Galaxy Training Network](https://wiki.galaxyproject.org/Teach/GTN) and all the contributors!
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