Bérénice Batut
Contributions
The following list includes only slides and tutorials where the individual has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.)
Tutorials
- Contributing to the Galaxy Training Material / Running the Galaxy Training material website locally
- Contributing to the Galaxy Training Material / Creating a new tutorial - Creating Interactive Galaxy Tours
- Contributing to the Galaxy Training Material / Generating PDF artefacts of the website
- Contributing to the Galaxy Training Material / Creating a new tutorial - Defining the technical infrastructure
- Contributing to the Galaxy Training Material / Creating a new tutorial
- Contributing to the Galaxy Training Material / Contributing with GitHub via command-line
- Contributing to the Galaxy Training Material / Including a new topic
- Contributing to the Galaxy Training Material / Contributing with GitHub via its interface
- Contributing to the Galaxy Training Material / Creating a new tutorial - Writing content in Markdown
- User Interface and Data Manipulation / RStudio in Galaxy
- Transcriptomics / Pre-processing of Single-Cell RNA Data
- Transcriptomics / Reference-based RNA-Seq data analysis
- Transcriptomics / RNA Seq Counts to Viz in R
- Transcriptomics / CLIP-Seq data analysis from pre-processing to motif detection
- Transcriptomics / Clustering 3K PBMCs with Scanpy
- Genome Annotation / Essential genes detection with Transposon insertion sequencing
- Variant Analysis / Exome sequencing data analysis for diagnosing a genetic disease
- Development in Galaxy / Data source integration
- Sequence analysis / Mapping
- Sequence analysis / Quality Control
- Ecology / Species distribution modeling
- Ecology / Regional GAM
- Teaching and Hosting Galaxy training / Set up a Galaxy for Training
- Teaching and Hosting Galaxy training / Organizing a workshop
- Teaching and Hosting Galaxy training / Running a workshop as instructor
- Introduction to Galaxy Analyses / From peaks to genes
- Introduction to Galaxy Analyses / Advanced R in Galaxy
- Introduction to Galaxy Analyses / R basics in Galaxy
- Epigenetics / Formation of the Super-Structures on the Inactive X
- Epigenetics / Identification of the binding sites of the Estrogen receptor
- Statistics and machine learning / Machine learning: classification and regression
- Metagenomics / 16S Microbial Analysis with mothur (extended)
- Metagenomics / Analyses of metagenomics data - The global picture
- Metagenomics / Metatranscriptomics analysis using microbiome RNA-seq data
- Metagenomics / Metatranscriptomics analysis using microbiome RNA-seq data (short)
- Metagenomics / 16S Microbial Analysis with mothur (short)
Slides
- Epigenetics / Introduction to ChIP-Seq data analysis
- Contributing to the Galaxy Training Material / Overview of the Galaxy Training Material
- Transcriptomics / Introduction to Transcriptomics
- Variant Analysis / Introduction to Variant analysis
- Development in Galaxy / Galaxy from a developer point of view
- Introduction to Galaxy Analyses / Introduction to Galaxy
- Metagenomics / Introduction to metagenomics
- Galaxy Server administration / Docker and Galaxy
- Contributing to the Galaxy Training Material / Contributing with GitHub via command-line
- Contributing to the Galaxy Training Material / Creating a new tutorial - Slides
- Development in Galaxy / Tool Shed: sharing Galaxy tools
- Development in Galaxy / Tool development and integration into Galaxy
- Development in Galaxy / Galaxy Interactive Tours
- Sequence analysis / Quality Control
- Epigenetics / ChIP-seq data analysis