Saskia Hiltemann
Contributions
Researcher at Erasmus Medical Center
Tutorials
- Introduction to Galaxy Analyses / Galaxy 101 for everyone
- Introduction to Galaxy Analyses / Galaxy 101
- Contributing to the Galaxy Training Material / Creating a new tutorial - Creating Interactive Galaxy Tours
- Contributing to the Galaxy Training Material / Creating a new tutorial - Defining the technical infrastructure
- Contributing to the Galaxy Training Material / Creating a new tutorial
- Contributing to the Galaxy Training Material / Running the Galaxy Training material website locally
- Contributing to the Galaxy Training Material / Creating a new tutorial - Writing content in Markdown
- Teaching and Hosting Galaxy training / Set up a Galaxy for Training
- Teaching and Hosting Galaxy training / Running a workshop as instructor
- Assembly / De Bruijn Graph Assembly
- Imaging / Introduction to image analysis using Galaxy
- Metagenomics / Analyses of metagenomics data - The global picture
- Metagenomics / 16S Microbial Analysis with mothur (short)
- Metagenomics / Antibiotic resistance detection
- Metagenomics / Metatranscriptomics analysis using microbiome RNA-seq data
- Metagenomics / Metatranscriptomics analysis using microbiome RNA-seq data (short)
- Metagenomics / 16S Microbial Analysis with mothur (extended)
- Development in Galaxy / Visualizations: generic plugins
- Development in Galaxy / Visualizations: JavaScript plugins
- Development in Galaxy / Data source integration
- Visualisation / Genomic Data Visualisation with JBrowse
- Visualisation / Visualisation with Circos
- Galaxy Server administration / Ansible
- Galaxy Server administration / Training Infrastructure as a Service (TIaaS)
- Galaxy Server administration / Galaxy Installation with Ansible
Slides
- Introduction to Galaxy Analyses / Introduction to Galaxy
- Metagenomics / Introduction to metagenomics
- Visualisation / Visualisations in Galaxy
- User Interface and Data Manipulation / Getting data into Galaxy
- Contributing to the Galaxy Training Material / Creating a new tutorial - Slides
- Teaching and Hosting Galaxy training / Workshop Kickoff
- Sequence analysis / Mapping
- Metagenomics / Introduction to metatranscriptomics
- Development in Galaxy / Visualizations: generic plugins
- Development in Galaxy / Tool development and integration into Galaxy
- Development in Galaxy / Visualizations: JavaScript Plugins
- Development in Galaxy / Galaxy Interactive Environments
- Visualisation / JBrowse
- Visualisation / Circos
- Galaxy Server administration / Empathy