Bérénice Batut
Contributions
The following list includes only slides and tutorials where the individual has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.)
Tutorials
- User Interface and Data Manipulation / RStudio in Galaxy
- Statistics and machine learning / Machine learning: classification and regression
- Introduction to Galaxy Analyses / Advanced R in Galaxy
- Introduction to Galaxy Analyses / From peaks to genes
- Introduction to Galaxy Analyses / R basics in Galaxy
- Contributing to the Galaxy Training Material / Generating PDF artefacts of the website
- Contributing to the Galaxy Training Material / Creating a new tutorial - Creating Interactive Galaxy Tours
- Contributing to the Galaxy Training Material / Including a new topic
- Contributing to the Galaxy Training Material / Creating a new tutorial - Defining the technical infrastructure
- Contributing to the Galaxy Training Material / Contributing with GitHub via its interface
- Contributing to the Galaxy Training Material / Contributing with GitHub via command-line
- Contributing to the Galaxy Training Material / Creating a new tutorial
- Contributing to the Galaxy Training Material / Running the Galaxy Training material website locally
- Contributing to the Galaxy Training Material / Creating a new tutorial - Writing content in Markdown
- Transcriptomics / RNA Seq Counts to Viz in R
- Transcriptomics / CLIP-Seq data analysis from pre-processing to motif detection
- Transcriptomics / Pre-processing of Single-Cell RNA Data
- Transcriptomics / Reference-based RNA-Seq data analysis
- Transcriptomics / Clustering 3K PBMCs with Scanpy
- Genome Annotation / Essential genes detection with Transposon insertion sequencing
- Teaching and Hosting Galaxy training / Organizing a workshop
- Teaching and Hosting Galaxy training / Set up a Galaxy for Training
- Teaching and Hosting Galaxy training / Running a workshop as instructor
- Epigenetics / Formation of the Super-Structures on the Inactive X
- Epigenetics / Identification of the binding sites of the Estrogen receptor
- Variant Analysis / Exome sequencing data analysis for diagnosing a genetic disease
- Sequence analysis / Mapping
- Sequence analysis / Quality Control
- Metagenomics / Analyses of metagenomics data - The global picture
- Metagenomics / 16S Microbial Analysis with mothur (short)
- Metagenomics / Metatranscriptomics analysis using microbiome RNA-seq data
- Metagenomics / Metatranscriptomics analysis using microbiome RNA-seq data (short)
- Metagenomics / 16S Microbial Analysis with mothur (extended)
- Ecology / Regional GAM
- Ecology / Species distribution modeling
- Development in Galaxy / Data source integration
Slides
- Epigenetics / Introduction to ChIP-Seq data analysis
- Introduction to Galaxy Analyses / Introduction to Galaxy
- Contributing to the Galaxy Training Material / Overview of the Galaxy Training Material
- Transcriptomics / Introduction to Transcriptomics
- Variant Analysis / Introduction to Variant analysis
- Metagenomics / Introduction to metagenomics
- Development in Galaxy / Galaxy from a developer point of view
- Contributing to the Galaxy Training Material / Creating a new tutorial - Slides
- Contributing to the Galaxy Training Material / Contributing with GitHub via command-line
- Epigenetics / ChIP-seq data analysis
- Sequence analysis / Quality Control
- Development in Galaxy / Tool development and integration into Galaxy
- Development in Galaxy / Tool Shed: sharing Galaxy tools
- Development in Galaxy / Galaxy Interactive Tours
- Galaxy Server administration / Docker and Galaxy