Galaxy Server administration

Resources related to configuration and maintenance of Galaxy servers

Material

Core

These are the core, foundational topics for the majority of administration in Galaxy.

Lesson Slides Hands-on
Galaxy from an administrator point of view
Ansible
Galaxy Installation with Ansible
deploying

Further Learning

These topics will let you further expand your knowledge. They all build upon what you learned in the core topics, and many expect that you have a setup identical to the one started in the core trainings.

Lesson Slides Hands-on
Connecting Galaxy to a compute cluster
jobs
Distributed Object Storage
storage
External Authentication
authentication
Galaxy Monitoring with Reports
monitoring
Galaxy Monitoring with Telegraf and Grafana
monitoring
Galaxy Monitoring with gxadmin
monitoring
Galaxy Tool Management with Ephemeris
tools
Reference Data with CVMFS
Running Jobs on Remote Resources with Pulsar
jobs
Training Infrastructure as a Service (TIaaS)
training jobs

Other


Assorted other tutorials

Lesson Slides Hands-on
Advanced customisation of a Galaxy instance
Automation with Jenkins
automation
Controlling Galaxy with systemd or Supervisor
Deploying a compute cluster in OpenStack via Terraform
terraform deploying cloud
Docker and Galaxy
Empathy
Galactic Database
Galaxy Database schema
Galaxy Installation on Kubernetes
kubernetes
Galaxy Interactive Tools
ansible
Galaxy Monitoring
Galaxy Troubleshooting
Galaxy on the Cloud
Gearing towards production
Managing Galaxy on Kubernetes
kubernetes
Recording Job Metrics
Reference Data with CVMFS without Ansible
Reference Genomes in Galaxy
Server Maintenance and Backups
The Galaxy Tool Shed
Upgrading Galaxy
User, Group and Quota managment
uWSGI

Maintainers

This material is maintained by:

Björn GrüningBjörn Grüning, Martin ČechMartin Čech, Helena RascheHelena Rasche, Simon GladmanSimon Gladman

For any question related to this topic and the content, you can contact them or visit our Gitter channel.

Contributors

This material was contributed to by:

Valentin MarconValentin Marcon, Nate CoraorNate Coraor, Björn GrüningBjörn Grüning, Helena RascheHelena Rasche, Martin ČechMartin Čech, Saskia HiltemannSaskia Hiltemann, Bérénice BatutBérénice Batut, Nicola SoranzoNicola Soranzo, Hans-Rudolf HotzHans-Rudolf Hotz, Pablo MorenoPablo Moreno, Enis AfganEnis Afgan, Nuwan GoonasekeraNuwan Goonasekera, Alex MahmoudAlex Mahmoud, Sergey GolitsynskiySergey Golitsynskiy, Simon GladmanSimon Gladman, Daniel BlankenbergDaniel Blankenberg, Abdulrahman AzabAbdulrahman Azab, Marius van den BeekMarius van den Beek