One Health

One Health is unified approach that aims to sustainably balance the health of humans, animals, and ecosystems, as all of the health of each of these groups is closely interlinked.

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Material

Computational chemistry

Lesson Slides Hands-on Recordings Input dataset Workflows
Hands-on: Hands-on: Virtual screening of the SARS-CoV-2 main protease with rxDock and pose scoring
covid19 one-health

Evolution

Lesson Slides Hands-on Recordings Input dataset Workflows
Hands-on: Hands-on: Identifying tuberculosis transmission links: from SNPs to transmission clusters
prokaryote one-health microgalaxy
Hands-on: Hands-on: Tree thinking for tuberculosis evolution and epidemiology
prokaryote one-health phylogenetics microgalaxy

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Hands-on: Hands-on: Identification of AMR genes in an assembled bacterial genome
gmod illumina amr one-health jbrowse1 microgalaxy

Variant Analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Hands-on: Hands-on: Avian influenza viral strain analysis from gene segment sequencing data
virology one-health
Hands-on: Hands-on: From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis
covid19 virology one-health
Hands-on: Hands-on: M. tuberculosis Variant Analysis
prokaryote one-health microgalaxy
Hands-on: Hands-on: Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data
covid19 virology one-health
Hands-on: Hands-on: Pox virus genome analysis from tiled-amplicon sequencing data
virology one-health

Galaxy instances

You can use a public Galaxy instance which has been tested for the availability of the used tools. They are listed along with the tutorials above.

Editorial Board

This material is reviewed by our Editorial Board:

orcid logoWolfgang Maier avatar Wolfgang Maierorcid logoPeter van Heusden avatar Peter van Heusdenorcid logoTomas Klingström avatar Tomas Klingströmorcid logoHelena Rasche avatar Helena Rasche

For any question related to this topic and the content, you can contact them or visit our Gitter channel.

Contributors

This material was contributed to by:

Avans Hogeschool avatar Avans Hogeschoolorcid logoPeter van Heusden avatar Peter van Heusdenorcid logoMiaomiao Zhou avatar Miaomiao Zhouorcid logoSimon Gladman avatar Simon Gladmanorcid logoWolfgang Maier avatar Wolfgang MaierSimon Bray avatar Simon Brayorcid logoDaniel Blankenberg avatar Daniel BlankenbergThoba Lose avatar Thoba Loseorcid logoHelena Rasche avatar Helena Rascheorcid logoDave Clements avatar Dave ClementsDaniela Brites avatar Daniela Britesorcid logoSaskia Hiltemann avatar Saskia HiltemannAnton Nekrutenko avatar Anton NekrutenkoGalo A. Goig avatar Galo A. GoigBazante Sanders avatar Bazante SandersMarius van den Beek avatar Marius van den Beekorcid logoBérénice Batut avatar Bérénice BatutChristoph Stritt avatar Christoph Strittorcid logoTomas Klingström avatar Tomas Klingström

Funders

This material was funded by:

ABRomics avatar ABRomicsAddressing the dual emerging threats of African Swine Fever and Lumpy Skin Disease in Europe avatar DEFENDBeYond-COVID avatar BeYond-COVIDELIXIR-CONVERGE avatar ELIXIR-CONVERGE