Workflows

These workflows are associated with How to reproduce published Galaxy analyses

To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.

GTN Training: Galaxy 101 For Everyone

Last updated Jul 10, 2021

Launch in Tutorial Mode
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Tests: ❌ Results: Not yet automated

Download Galaxy Workflow.ga Galaxy Main Galaxy Australia Galaxy Europe Galaxy France Import to another server (≥23.0+ only!) 
flowchart TD
  0["ℹ️ Input Dataset\niris"];
  style 0 stroke:#2c3143,stroke-width:4px;
  1["Convert CSV to tabular"];
  0 -->|output| 1;
  2["Datamash"];
  1 -->|tabular| 2;
  5a3ec911-9886-4c02-a167-ad12dbcfae0b["Output\ndatamash_output"];
  2 --> 5a3ec911-9886-4c02-a167-ad12dbcfae0b;
  style 5a3ec911-9886-4c02-a167-ad12dbcfae0b stroke:#2c3143,stroke-width:4px;
  3["Remove beginning"];
  1 -->|tabular| 3;
  4["Cut"];
  3 -->|out_file1| 4;
  5["Group"];
  3 -->|out_file1| 5;
  1bf3747a-a7ad-41dd-bc14-00a9d929ec87["Output\ngroup1"];
  5 --> 1bf3747a-a7ad-41dd-bc14-00a9d929ec87;
  style 1bf3747a-a7ad-41dd-bc14-00a9d929ec87 stroke:#2c3143,stroke-width:4px;
  6["Group"];
  3 -->|out_file1| 6;
  566eba35-d6f4-41d4-a620-5a445e54ffb7["Output\ngroup2"];
  6 --> 566eba35-d6f4-41d4-a620-5a445e54ffb7;
  style 566eba35-d6f4-41d4-a620-5a445e54ffb7 stroke:#2c3143,stroke-width:4px;
  7["Scatterplot w ggplot2"];
  3 -->|out_file1| 7;
  8["Scatterplot w ggplot2"];
  3 -->|out_file1| 8;
  9["Unique"];
  4 -->|out_file1| 9;
  ec39c0ad-eb26-47d6-b9a7-c2e5ffa043c6["Output\nunique_output"];
  9 --> ec39c0ad-eb26-47d6-b9a7-c2e5ffa043c6;
  style ec39c0ad-eb26-47d6-b9a7-c2e5ffa043c6 stroke:#2c3143,stroke-width:4px;

Importing into Galaxy

Below are the instructions for importing these workflows directly into your Galaxy server of choice to start using them!
Hands-on: Importing a workflow
  • Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
  • Click on Import at the top-right of the screen
  • Provide your workflow
    • Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”
    • Option 2: Upload the workflow file in the box labelled “Archived Workflow File”
  • Click the Import workflow button

Below is a short video demonstrating how to import a workflow from GitHub using this procedure: