Using Galaxy and Managing your Data
A collection of microtutorials explaining various features of the Galaxy user interface and manipulating data within Galaxy.
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Material
Uploading Data
These tutorials will help you get data into Galaxy, before you analyse it.
| Lesson | Slides | Hands-on | Recordings |
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Getting data into Galaxy
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| Rule Based Uploader | |||
| Rule Based Uploader: Advanced | |||
| SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis |
Histories
Managing your analysis histories efficiently
| Lesson | Slides | Hands-on | Recordings |
|---|---|---|---|
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Searching Your History
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Understanding Galaxy history system
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Making Data Manageable
Now that you have data in Galaxy, let's make it easier to work with through collections and structured data.
| Lesson | Slides | Hands-on | Recordings |
|---|---|---|---|
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Group tags for complex experimental designs
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| Multisample Analysis | |||
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Name tags for following complex histories
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| Using dataset collections |
Workflows
Using Galaxy workflows to scale analysis
Analysing Data
Some advanced topics in data analysis.
| Lesson | Slides | Hands-on | Recordings |
|---|---|---|---|
| InterMine integration with Galaxy | |||
| JupyterLab in Galaxy | |||
| RStudio in Galaxy | |||
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Use Jupyter notebooks in Galaxy
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Download and free up space
Once you are done with your analyses in Galaxy, it's time to download your data and free up space.
| Lesson | Slides | Hands-on | Recordings |
|---|---|---|---|
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Downloading and Deleting Data in Galaxy
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Other
Assorted Tutorials
| Lesson | Slides | Hands-on | Recordings |
|---|---|---|---|
| Submitting sequence data to ENA |
Frequently Asked Questions
Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.
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Editorial Board
This material is reviewed by our Editorial Board:
Jennifer Hillman-Jackson
Helena Rasche
For any question related to this topic and the content, you can contact them or visit our Gitter channel.
Contributors
This material was contributed to by:
Simon Gladman
Anton Nekrutenko
Avani Khadilkar
Björn Grüning
Elizabeth Sheets
Daniela Butano
Saskia Hiltemann
Boris Depoortere
Simon Bray
Helena Rasche
Toby Hodges
Dave Clements
Jon Trow
Martin Čech
Adelaide Rhodes
Marius van den Beek
Delphine Lariviere
Yo Yehudi
Enis Afgan
Anne Pajon
Laila Los
Fotis E. Psomopoulos
Miguel Roncoroni
Bérénice Batut
Aysam Guerler
Anne Fouilloux
Wolfgang Maier
Ekaterina Polkh
Maria Doyle
John Chilton
Bert Droesbeke
Charles Overbeck
Cristóbal Gallardo
Funders
This material was funded by:
Gallantries