Using Galaxy and Managing your Data
A collection of microtutorials explaining various features of the Galaxy user interface and manipulating data within Galaxy.
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Material
Uploading Data
These tutorials will help you get data into Galaxy, before you analyse it.
Lesson | Slides | Hands-on | Recordings |
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Getting data into Galaxy
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Rule Based Uploader | |||
Rule Based Uploader: Advanced | |||
SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis |
Histories
Managing your analysis histories efficiently
Lesson | Slides | Hands-on | Recordings |
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Searching Your History
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Understanding Galaxy history system
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Making Data Manageable
Now that you have data in Galaxy, let's make it easier to work with through collections and structured data.
Lesson | Slides | Hands-on | Recordings |
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Group tags for complex experimental designs
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Multisample Analysis | |||
Name tags for following complex histories
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Using dataset collections |
Workflows
Using Galaxy workflows to scale analysis
Analysing Data
Some advanced topics in data analysis.
Lesson | Slides | Hands-on | Recordings |
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InterMine integration with Galaxy | |||
JupyterLab in Galaxy | |||
RStudio in Galaxy | |||
Use Jupyter notebooks in Galaxy
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Download and free up space
Once you are done with your analyses in Galaxy, it's time to download your data and free up space.
Lesson | Slides | Hands-on | Recordings |
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Downloading and Deleting Data in Galaxy
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Other
Assorted Tutorials
Lesson | Slides | Hands-on | Recordings |
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Submitting sequence data to ENA |
Frequently Asked Questions
Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.
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Editorial Board
This material is reviewed by our Editorial Board:
Jennifer Hillman-Jackson Helena RascheFor any question related to this topic and the content, you can contact them or visit our Gitter channel.
Contributors
This material was contributed to by:
Bert Droesbeke Elizabeth Sheets Jon Trow Helena Rasche Laila Los Björn Grüning Saskia Hiltemann Anne Pajon Miguel Roncoroni Delphine Lariviere Cristóbal Gallardo Daniela Butano Boris Depoortere Aysam Guerler Bérénice Batut Marius van den Beek Simon Bray Dave Clements Ekaterina Polkh Wolfgang Maier Anton Nekrutenko Maria Doyle Adelaide Rhodes Martin Čech Yo Yehudi Charles Overbeck Toby Hodges Fotis E. Psomopoulos Avani Khadilkar Anne Fouilloux John Chilton Simon Gladman Enis AfganFunders
This material was funded by:
Gallantries